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Achievements

Achievement: YOLOAchievement: Pull SharkAchievement: Arctic Code Vault Contributor

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  • dea_limma_fz Public

    Forked from epigen/dea_limma

    A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.

    R MIT License Updated Sep 17, 2024

  • spilterlize_integrate_fz Public

    Forked from epigen/spilterlize_integrate

    A Snakemake workflow to split, filter, normalize, integrate and select highly variable features of count matrices resulting from experiments with sequencing readout (e.g., RNA-seq, ATAC-seq, ChIP-s…

    Python MIT License Updated Sep 17, 2024

  • toolkit Public

    Forked from afrendeiro/toolkit

    A toolkit for NGS analysis with Python

    Python GNU General Public License v3.0 Updated Jul 12, 2021

  • open_pipelines Public

    Forked from epigen/open_pipelines

    Pipelines for NGS data preprocessing by the Bock lab and friends

    Python Updated Mar 16, 2021

  • microtest Public

    Forked from epigen/microtest

    Small test data from various data types for testing pipelines

    Shell Updated Aug 27, 2020

  • combat.py Public

    Forked from brentp/combat.py

    python / numpy / pandas / patsy version of ComBat for removing batch effects.

    Python MIT License Updated Apr 16, 2019

  • pepenv Public

    Forked from pepkit/divcfg

    PEP environment configuration. Standardized cluster resource manager configuration.

    Shell Updated Jan 14, 2019

  • happy Public

    github repository from CSMA 2017

    Updated Jun 13, 2017