build: curate release 0.4.0

g4challenge · Apr 5, 2021 · 28b8c83 · 28b8c83
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diff --git a/.drake/data/2021ec289b1acb7b.rds b/.drake/data/2021ec289b1acb7b.rds
diff --git a/.drake/data/58c43b1f0d59fa7d.rds b/.drake/data/58c43b1f0d59fa7d.rds
diff --git a/.drake/data/8ba7559cdf9213af.rds b/.drake/data/8ba7559cdf9213af.rds
diff --git a/.drake/data/add53ced6ee9cfa2.rds b/.drake/data/add53ced6ee9cfa2.rds
diff --git a/.drake/data/b73e8db25b9cb5a8.rds b/.drake/data/b73e8db25b9cb5a8.rds
diff --git a/.drake/data/fc4300091153b590.rds b/.drake/data/fc4300091153b590.rds
diff --git a/.drake/drake/history/db b/.drake/drake/history/db
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diff --git a/.prov/prov_make/data/5-report.Rmd b/.prov/prov_make/data/5-report.Rmd
@@ -0,0 +1,24 @@
+---
+title: "Example Scenario 1"
+author: Lukas Huber
+output: html_document
+---
+
+
+Run `make.R` to generate the output `report.html` and its dependencies. 
+
+Because of the use of `loadd()` and `readd()` below, `drake` knows `report.report` depends on targets `sc1_interim_data`.
+
+```{r content}
+library(drake)
+loadd(sc1_interim_data)
+print(sc1_interim_data)
+```
+
+
+```{r content2}
+library(tidyverse)
+ggplot(sc1_interim_data, aes(x=timestamp, y=cpp, color=factor(gupi)))+
+  geom_line()
+```
+
diff --git a/.prov/prov_make/data/50-package.rds b/.prov/prov_make/data/50-package.rds
diff --git a/.prov/prov_make/data/51-package.rds b/.prov/prov_make/data/51-package.rds
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diff --git a/.prov/prov_make/data/59-package.rds b/.prov/prov_make/data/59-package.rds
diff --git a/.prov/prov_make/data/6-package.rds b/.prov/prov_make/data/6-package.rds
diff --git a/.prov/prov_make/data/60-package.rds b/.prov/prov_make/data/60-package.rds
diff --git a/.prov/prov_make/data/61-package.rds b/.prov/prov_make/data/61-package.rds
diff --git a/.prov/prov_make/data/62-package.rds b/.prov/prov_make/data/62-package.rds
diff --git a/.prov/prov_make/data/63-package.rds b/.prov/prov_make/data/63-package.rds
diff --git a/.prov/prov_make/data/64-package.rds b/.prov/prov_make/data/64-package.rds
diff --git a/.prov/prov_make/data/65-package.rds b/.prov/prov_make/data/65-package.rds
diff --git a/.prov/prov_make/data/66-package.rds b/.prov/prov_make/data/66-package.rds
diff --git a/.prov/prov_make/data/67-package.rds b/.prov/prov_make/data/67-package.rds
diff --git a/.prov/prov_make/data/68-package.rds b/.prov/prov_make/data/68-package.rds
diff --git a/.prov/prov_make/data/69-package.rds b/.prov/prov_make/data/69-package.rds
diff --git a/.prov/prov_make/data/7-DESCRIPTION b/.prov/prov_make/data/7-DESCRIPTION
@@ -0,0 +1,34 @@
+Package: reproducibleFairTemplate
+Type: Package
+Title: Reproducible and fair data science project template
+Version: 0.4.0
+Authors@R: person("Lukas", "Huber", 
+                  email = "[email protected]",
+                  role = c("aut", "cre"),
+                  comment=c(ORCID="0000-0001-5443-0290"))
+Description: Template uses docker, git, rmd, drake, mandrake for reproducible data science.
+    It is aimed at neuro-intensive care research teams with interdisciplinary teams, suits R and Python workflows.
+License: GPL (>= 3)
+Encoding: UTF-8
+LazyData: true
+Depends:
+    tidyverse
+Imports:
+    drake,
+    haven,
+    readxl,
+    lubridate,
+    pacman,
+    visNetwork,
+    mandrake,
+    reticulate,
+    gert,
+    ggplot2
+Remotes:
+    ropensci/drake,
+    wlandau/txtq,
+    mstr3336/mandrake
+RoxygenNote: 7.1.1
+Roxygen: list(roclets = c("namespace", "rd", "roxytest::testthat_roclet"))
+Suggests: 
+    testthat
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