Raw data and analytical codes

gaospecial · Nov 11, 2020 · 37d3f1d · 37d3f1d
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diff --git a/data/DEG_results.EC.rds b/data/DEG_results.EC.rds
diff --git a/data/DEG_results.PP.rds b/data/DEG_results.PP.rds
diff --git a/data/dds.EC.2.rds b/data/dds.EC.2.rds
diff --git a/data/dds.PP.2.rds b/data/dds.PP.2.rds
diff --git a/data/qPCR_growth_curve/2018-08-03 204337_Results_ViiA7_export.txt b/data/qPCR_growth_curve/2018-08-03 204337_Results_ViiA7_export.txt
diff --git a/data/qPCR_growth_curve/2018-08-25 174758_Results_ViiA7_export.txt b/data/qPCR_growth_curve/2018-08-25 174758_Results_ViiA7_export.txt
diff --git a/data/qPCR_growth_curve/meta.txt b/data/qPCR_growth_curve/meta.txt
@@ -0,0 +1,36 @@
+sample	condition	dilution	time
+Sample 1	all	10	0
+Sample 2	none	10	0
+Sample 3	more	10	0
+Sample 4	equal	10	0
+Sample 5	less	10	0
+Sample 6	all	10	0.5
+Sample 7	none	10	0.5
+Sample 8	more	10	0.5
+Sample 9	equal	10	0.5
+Sample 10	less	10	0.5
+Sample 11	all	10	1
+Sample 12	none	10	1
+Sample 13	more	10	1
+Sample 14	equal	10	1
+Sample 15	less	10	1
+Sample 16	all	10	2
+Sample 17	none	10	2
+Sample 18	more	10	2
+Sample 19	equal	10	2
+Sample 20	less	10	2
+Sample 21	all	10	4
+Sample 22	none	10	4
+Sample 23	more	10	4
+Sample 24	equal	10	4
+Sample 25	less	10	4
+Sample 26	all	10	8
+Sample 27	none	10	8
+Sample 28	more	10	8
+Sample 29	equal	10	8
+Sample 30	less	10	8
+Sample 31	all	100	24
+Sample 32	none	100	24
+Sample 33	more	100	24
+Sample 34	equal	100	24
+Sample 35	less	100	24
diff --git a/data/rna/dds.EC.rds b/data/rna/dds.EC.rds
diff --git a/data/rna/dds.PP.rds b/data/rna/dds.PP.rds
diff --git a/data/rna/dds.rds b/data/rna/dds.rds
diff --git a/data/rna/ht_counts.rds b/data/rna/ht_counts.rds
diff --git a/data/tableS1.xlsx b/data/tableS1.xlsx
diff --git a/data/~$tableS1.xlsx b/data/~$tableS1.xlsx
diff --git a/figures/figure 1.tiff b/figures/figure 1.tiff
diff --git a/figures/figure 2.tiff b/figures/figure 2.tiff
diff --git a/figures/figure 3.tiff b/figures/figure 3.tiff
diff --git a/figures/figure 4.tiff b/figures/figure 4.tiff
diff --git a/figures/figure 5.tiff b/figures/figure 5.tiff
diff --git a/figures/figure S10.tiff b/figures/figure S10.tiff
diff --git a/figures/figure S11.tiff b/figures/figure S11.tiff
diff --git a/figures/figure S12.tiff b/figures/figure S12.tiff
diff --git a/figures/figure S13.tiff b/figures/figure S13.tiff
diff --git a/figures/figure S15.tiff b/figures/figure S15.tiff
diff --git a/figures/figure S2.tiff b/figures/figure S2.tiff
diff --git a/figures/figure S3.tiff b/figures/figure S3.tiff
diff --git a/figures/figure S4.tiff b/figures/figure S4.tiff
diff --git a/figures/figure S8.tiff b/figures/figure S8.tiff
diff --git a/figures/figure S9.tiff b/figures/figure S9.tiff
diff --git a/figures/figure s1.tiff b/figures/figure s1.tiff