Update deprecated function (#13)

See https://software.broadinstitute.org/gatk/documentation/tooldocs/current/picard_sam_SetNmAndUqTags.php
gatk-workflows · Feb 17, 2019 · 92b1157 · 92b1157
1 parent 8ffa26f
commit 92b1157
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/processing-for-variant-discovery-gatk4.wdl b/processing-for-variant-discovery-gatk4.wdl
@@ -420,7 +420,7 @@ task SortAndFixTags {
       --CREATE_MD5_FILE false \
     | \
     ${gatk_path} --java-options "-Dsamjdk.compression_level=${compression_level} ${java_opt_fix}" \
-      SetNmAndUqTags \
+      SetNmMdAndUqTags \
       --INPUT /dev/stdin \
       --OUTPUT ${output_bam_basename}.bam \
       --CREATE_INDEX true \