- Adds support for reorienting contigs where the gene of interest spands the contig ends #90. Thanks @marade @oschwengers.
- Specifically, this is done by rotating each contig in the input by half the genome length, then running MMseqs2 for both the original and rotated contigs. The MMseqs2 hit with the highest bitscore across the original and rotated contigs will be chosen as the top hit to rotate by, therefore enabling detection of partial hits (on the original contig) that span the contig ends.
- This has only been implemented for
dnaapler all(this should be the command used by 99% of users).
Contributors
oschwengers and marade