Bump version: 0.5.4 → 0.5.5 #80

Workflow file for this run

.github/workflows/release-blobtk.yml at eb58647

	name: release-blobtk

	on:
	push:
	branches:
	# - main
	- feature/release-action
	tags:
	- "*"

	env:
	VERSION: 0.5.5

	jobs:
	macos-binary:
	runs-on: macos-latest
	steps:
	- uses: actions/checkout@v3
	- uses: actions/setup-python@v4
	with:
	python-version: "3.10"
	- name: Install Rust toolchain
	uses: dtolnay/rust-toolchain@stable
	with:
	targets: x86_64-apple-darwin
	- name: Build
	working-directory: ./rust
	run: \|
	cargo build --target=x86_64-apple-darwin --release
	- name: Rename binary
	run: \|
	mv ./rust/target/x86_64-apple-darwin/release/blobtk ./rust/target/x86_64-apple-darwin/release/blobtk-macos-x64
	- name: Upload binary
	uses: actions/upload-artifact@v3
	with:
	name: binaries
	path: rust/target/x86_64-apple-darwin/release/blobtk-macos-*

	macos-binary-arm64:
	runs-on: macos-latest
	steps:
	- uses: actions/checkout@v3
	- uses: actions/setup-python@v4
	with:
	python-version: "3.10"
	- name: Install Rust toolchain
	uses: dtolnay/rust-toolchain@stable
	with:
	targets: aarch64-apple-darwin
	- name: Build
	working-directory: ./rust
	run: \|
	cargo build --target=aarch64-apple-darwin --release
	- name: Rename binary
	run: \|
	mv ./rust/target/aarch64-apple-darwin/release/blobtk ./rust/target/aarch64-apple-darwin/release/blobtk-macos-arm64
	- name: Upload binary
	uses: actions/upload-artifact@v3
	with:
	name: binaries
	path: rust/target/aarch64-apple-darwin/release/blobtk-macos-*

	linux-binary:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- name: Install static libraries for C
	run: sudo apt-get install -y libc6-dev
	- name: Install Rust toolchain
	uses: dtolnay/rust-toolchain@stable
	with:
	toolchain: stable
	targets: x86_64-unknown-linux-gnu
	- name: Build
	working-directory: ./rust
	run: RUSTFLAGS="-C target-feature=+crt-static -C relocation-model=static" cargo build --target x86_64-unknown-linux-gnu --release
	- name: Rename binary
	run: \|
	mv ./rust/target/x86_64-unknown-linux-gnu/release/blobtk ./rust/target/release/blobtk-linux
	- name: Upload binary
	uses: actions/upload-artifact@v3
	with:
	name: binaries
	path: ./rust/target/release/blobtk-*

	sdist-wheels:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- name: Build sdist
	uses: PyO3/maturin-action@v1
	with:
	command: sdist
	args: --out dist -m rust/Cargo.toml
	- name: Upload sdist
	uses: actions/upload-artifact@v3
	with:
	name: wheels
	path: dist

	linux-wheels:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python:
	- "3.9"
	- "3.10"
	- "3.11"
	- "3.12"
	target:
	- x86_64 # , x86, aarch64, armv7, s390x, ppc64le]
	steps:
	- uses: actions/checkout@v3
	- uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python }}
	- name: Build wheels
	uses: PyO3/maturin-action@v1
	with:
	target: ${{ matrix.target }}
	before-script-linux: yum install -y perl-IPC-Cmd
	args: --release --out dist -i python${{ matrix.python }} --target x86_64-unknown-linux-gnu -m rust/Cargo.toml
	sccache: "true"
	manylinux: auto
	- name: Upload wheels
	uses: actions/upload-artifact@v3
	with:
	name: wheels
	path: dist

	# windows:
	# runs-on: windows-latest
	# strategy:
	# matrix:
	# target: [x64] # , x86]
	# steps:
	# - uses: actions/checkout@v3
	# - uses: actions/setup-python@v4
	# with:
	# python-version: "3.10"
	# architecture: ${{ matrix.target }}
	# - name: Build wheels
	# uses: PyO3/maturin-action@v1
	# with:
	# target: ${{ matrix.target }}
	# args: --release --out dist --find-interpreter -m rust/Cargo.toml
	# sccache: "true"
	# - name: Upload wheels
	# uses: actions/upload-artifact@v3
	# with:
	# name: wheels
	# path: dist

	macos-wheels:
	runs-on: macos-latest
	strategy:
	matrix:
	python:
	- "3.9"
	- "3.10"
	- "3.11"
	- "3.12"
	steps:
	- uses: actions/checkout@v3
	- uses: actions/setup-python@v4
	with:
	python-version: ${{matrix.python}}
	- name: Build wheels
	uses: PyO3/maturin-action@v1
	with:
	args: --release --out dist -i python${{matrix.python}} --target x86_64-apple-darwin -m rust/Cargo.toml
	sccache: "true"
	- name: Build universal wheels
	uses: PyO3/maturin-action@v1
	with:
	args: --release --out dist -i python${{matrix.python}} --universal2 -m rust/Cargo.toml
	sccache: "true"
	- name: Upload wheels
	uses: actions/upload-artifact@v3
	with:
	name: wheels
	path: dist

	build-and-push-docker-develop:
	runs-on: ubuntu-latest
	if: ${{ !startsWith(github.ref, 'refs/tags/') }}
	steps:
	- name: Checkout
	uses: actions/checkout@v3
	- name: Login to Docker Hub
	uses: docker/login-action@v2
	with:
	username: ${{ secrets.DOCKER_HUB_USERNAME }}
	password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
	- name: Extract metadata (tags, labels) for Docker
	id: meta
	uses: docker/metadata-action@v4
	with:
	images: genomehubs/blobtk
	- name: Build and push Docker image
	uses: docker/build-push-action@v4
	with:
	context: ./rust
	push: true
	tags: genomehubs/blobtk:develop
	labels: ${{ steps.meta.outputs.labels }}

	create-conda-release-macos:
	name: Create conda release Mac
	runs-on: macos-latest
	# if: startsWith(github.ref, 'refs/tags/')
	needs:
	- macos-binary
	- macos-wheels
	steps:
	- uses: actions/checkout@v3
	- uses: conda-incubator/setup-miniconda@v2
	with:
	auto-update-conda: true
	python-version: "3.10"
	- uses: actions/download-artifact@v3
	with:
	name: binaries
	path: ./dist
	- uses: actions/download-artifact@v3
	with:
	name: wheels
	path: ./dist
	- name: copy files
	run: \|
	mkdir -p ./conda/dist
	cp ./dist/macosx86_64.whl ./conda/dist/
	cp ./dist/blobtk-macos-x64 ./conda/dist/blobtk
	- name: conda build
	run: \|
	conda install -y conda-build
	export ANACONDA_API_TOKEN=${{ secrets.ANACONDA_API_TOKEN }}
	mkdir -p ./dist/osx-64
	conda build --no-anaconda-upload ./conda --output-folder ./dist
	ls ./dist/*
	- name: Upload package
	uses: actions/upload-artifact@v3
	with:
	name: conda
	path: dist

	# create-conda-release-macos-arm64:
	# name: Create conda release Mac arm64
	# runs-on: self-hosted
	# # if: startsWith(github.ref, 'refs/tags/')
	# needs:
	# - macos-binary-arm64
	# - macos-wheels
	# steps:
	# - uses: actions/checkout@v3
	# - uses: conda-incubator/setup-miniconda@v2
	# with:
	# auto-update-conda: true
	# python-version: "3.10"
	# - uses: actions/download-artifact@v3
	# with:
	# name: binaries
	# path: ./dist
	# - uses: actions/download-artifact@v3
	# with:
	# name: wheels
	# path: ./dist
	# - name: copy files
	# run: \|
	# mkdir -p ./conda/dist
	# cp ./dist/macosuniversal2.whl ./conda/dist/
	# cp ./dist/blobtk-macos-arm64 ./conda/dist/blobtk
	# - name: conda build
	# run: \|
	# conda install -y conda-build
	# export ANACONDA_API_TOKEN=${{ secrets.ANACONDA_API_TOKEN }}
	# mkdir -p ./dist/osx-arm64
	# conda build --no-anaconda-upload ./conda --output-folder ./dist
	# ls ./dist/*
	# - name: Upload package
	# uses: actions/upload-artifact@v3
	# with:
	# name: conda
	# path: dist

	create-conda-release-linux:
	name: Create conda release Linux
	runs-on: ubuntu-latest
	# if: startsWith(github.ref, 'refs/tags/')
	needs:
	- linux-binary
	- linux-wheels
	steps:
	- uses: actions/checkout@v3
	- uses: actions/download-artifact@v3
	with:
	name: binaries
	path: ./dist
	- uses: actions/download-artifact@v3
	with:
	name: wheels
	path: ./dist
	- name: copy files
	run: \|
	mkdir -p ./conda/dist
	cp ./dist/linux.whl ./conda/dist/
	cp ./dist/blobtk-linux ./conda/dist/blobtk
	- uses: conda-incubator/setup-miniconda@v2
	with:
	miniconda-version: latest
	auto-activate-base: true
	activate-environment: ""
	- name: conda build
	run: \|
	conda install -y conda-build
	export ANACONDA_API_TOKEN=${{ secrets.ANACONDA_API_TOKEN }}
	mkdir -p ./dist/linux-64
	conda build --no-anaconda-upload ./conda --output-folder ./dist
	ls ./dist/*
	- name: Upload package
	uses: actions/upload-artifact@v3
	with:
	name: conda
	path: dist

	create-github-release:
	name: Create GitHub release
	runs-on: ubuntu-latest
	needs:
	- create-conda-release-linux
	- create-conda-release-macos
	- macos-binary-arm64
	if: startsWith(github.ref, 'refs/tags/')
	steps:
	- uses: actions/checkout@v3
	- uses: actions/download-artifact@v3
	with:
	path: ./dist
	- name: create release
	uses: softprops/action-gh-release@v1
	with:
	files: \|
	dist/binaries/blobtk-*
	dist/wheels/blobtk-*
	# dist/wheels/blobtk*.tar.gz
	if: startsWith(github.ref, 'refs/tags/')
	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

	publish-crate:
	name: Publish crate
	runs-on: ubuntu-latest
	if: startsWith(github.ref, 'refs/tags/')
	needs: create-github-release
	steps:
	- uses: actions/checkout@v3
	- name: Install Rust toolchain
	uses: dtolnay/rust-toolchain@stable
	- name: Publish
	working-directory: ./rust
	run: cargo publish --token ${{ secrets.CRATES_IO_TOKEN }}

	upload-to-pypi:
	name: Upload to PyPI
	runs-on: ubuntu-latest
	if: startsWith(github.ref, 'refs/tags/')
	needs:
	- create-github-release
	steps:
	- uses: actions/download-artifact@v3
	with:
	name: wheels
	- uses: actions/setup-python@v4
	with:
	python-version: "3.10"
	- name: Publish to PyPI
	env:
	TWINE_USERNAME: __token__
	TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
	run: \|
	pip install --upgrade twine
	twine upload --skip-existing *

	build-and-push-docker-release:
	runs-on: ubuntu-latest
	needs: create-github-release
	steps:
	- name: Checkout
	uses: actions/checkout@v3
	- name: Login to Docker Hub
	uses: docker/login-action@v2
	with:
	username: ${{ secrets.DOCKER_HUB_USERNAME }}
	password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
	- name: Extract metadata (tags, labels) for Docker
	id: meta
	uses: docker/metadata-action@v4
	with:
	images: genomehubs/blobtk
	- name: Build and push Docker image
	uses: docker/build-push-action@v4
	with:
	context: ./rust
	push: true
	tags: genomehubs/blobtk:${{ env.VERSION }}, genomehubs/blobtk:latest
	labels: ${{ steps.meta.outputs.labels }}

	upload-to-conda:
	name: Upload to conda
	runs-on: ubuntu-latest
	if: startsWith(github.ref, 'refs/tags/')
	needs:
	- create-github-release
	steps:
	- uses: actions/checkout@v3
	- uses: actions/download-artifact@v3
	with:
	name: conda
	path: ./dist
	- uses: conda-incubator/setup-miniconda@v2
	with:
	miniconda-version: latest
	auto-activate-base: true
	activate-environment: ""
	- name: conda upload
	shell: bash -l {0}
	run: \|
	conda install -y anaconda-client
	export ANACONDA_API_TOKEN=${{ secrets.ANACONDA_API_TOKEN }}
	anaconda upload --force --label main ./dist/linux-64/*.tar.bz2
	anaconda upload --force --label main ./dist/osx-64/*.tar.bz2
	# anaconda upload --force --label main ./dist/osx-arm64/*.tar.bz2

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Bump version: 0.5.4 → 0.5.5 #80

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Bump version: 0.5.4 → 0.5.5 #80

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Workflow file for this run