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Add skip for SV calling #1683

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Add skip for SV calling

Add skip for SV calling #1683

Triggered via pull request January 24, 2025 12:24
@padraiccpadraicc
synchronize #544
padraicc:skip_sv_calling
Status Failure
Total duration 10m 45s
Artifacts –

ci.yml

on: pull_request
Matrix: test
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3 errors and 20 warnings
samplesheet | docker | NF-latest-everything
Process completed with exit code 1.
samplesheet_multisample_ont_bam | docker | NF-latest-everything
Process completed with exit code 1.
samplesheet_multisample_bam | docker | NF-latest-everything
Process completed with exit code 1.
ANNOTATE_SVS | docker | NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
SNV_ANNOTATION | docker | NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
CALL_SVS | docker | NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
SHORT_VARIANT_CALLING | docker | NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
RANK_VARIANTS | docker | NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
ANNOTATE_SVS | docker | NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
SHORT_VARIANT_CALLING | docker | NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
SNV_ANNOTATION | docker | NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
RANK_VARIANTS | docker | NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
CALL_REPEAT_EXPANSIONS | docker | NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
METHYLATION | docker | NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
CALL_SVS | docker | NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
METHYLATION | docker | NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
CALL_REPEAT_EXPANSIONS | docker | NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
samplesheet | docker | NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
samplesheet_multisample_ont_bam | docker | NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
samplesheet_multisample_bam | docker | NF-latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
samplesheet | docker | NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
samplesheet_multisample_ont_bam | docker | NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
samplesheet_multisample_bam | docker | NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636