rename metas to sample_metas for more descriptive naming

genomic-medicine-sweden · Jan 13, 2025 · 6c73e21 · 6c73e21
1 parent 079080f
commit 6c73e21
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/modules/local/create_pedigree_file/main.nf b/modules/local/create_pedigree_file/main.nf
@@ -8,7 +8,7 @@ process CREATE_PEDIGREE_FILE {
         'biocontainers/python:3.8.3' }"
 
     input:
-    tuple val(meta), val(metas)
+    tuple val(meta), val(sample_metas)
 
     output:
     tuple val(meta), path("*.ped"), emit: ped
@@ -19,9 +19,9 @@ process CREATE_PEDIGREE_FILE {
 
     script:
     def prefix   = task.ext.prefix ?: "${meta.id}"
-    def samples = (metas.collect().size() > 1) ? metas.sort{ a, b ->
+    def samples = (sample_metas.collect().size() > 1) ? sample_metas.sort{ a, b ->
         // First sort on family_id, then on sample id
-        a.family_id <=> b.family_id ?: a.id <=> b.id } : metas
+        a.family_id <=> b.family_id ?: a.id <=> b.id } : sample_metas
     outfile_text = ['#family_id', 'sample_id', 'father', 'mother', 'sex', 'phenotype'].join('\\t')
     def samples_list = []
     for(int i = 0; i<samples.size(); i++) {