Fix logic in the updateHistory function in singleCarbonSpecies.sh

run/shared/singleCarbonSpecies.sh - Now also remove lines from HISTORY.rc with a space after the species name (such as '_CO ') - Disable the Emissions collection for OCS-only simulations (as we do not yet have OCS emissions). This is only relevant for GCHP. Signed-off-by: Bob Yantosca <[email protected]>
geoschem · Apr 5, 2024 · 77b89f5 · 77b89f5
1 parent 670059d
commit 77b89f5
Showing 1 changed file with 10 additions and 2 deletions.
diff --git a/run/shared/singleCarbonSpecies.sh b/run/shared/singleCarbonSpecies.sh
@@ -220,9 +220,17 @@ function updateHistory() {
 
     # For GCHP: remove entries for species to be excluded
     for spc in ${1}; do
-        sed -i "/\_${spc}/d"   "${file}"
-        sed -i "/Emis${spc}/d" "${file}"
+	sed -i "/\_${spc}'/d"   "${file}"
+        sed -i "/\_${spc} '/d"  "${file}"
+        sed -i "/Emis${spc}_/d"  "${file}"
     done
+
+    # Also disable emissions for OCS-only simulations
+    # (as we currently do not have any)
+    isItemInList "OCS" "${1}"
+    if [[ $? == 1 ]]; then
+	sed -i -e "s/'Emissions/#'Emissions/" "${file}"
+    fi
 }