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Added license
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@stuchalk
stuchalk committed Mar 19, 2016
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4 changes: 4 additions & 0 deletions .gitignore
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# Created by .ignore support plugin (hsz.mobi)

/other
/.idea
/ontology/catalog-v001.xml
4 changes: 4 additions & 0 deletions license.md
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# License
This work is provided under the Creative Commons Attibution-ShareAlike 4.0 International (4.0) license.
* For a general overview go to http://creativecommons.org/licenses/by-sa/4.0/.
* For a complete legal definition go to http://creativecommons.org/licenses/by-sa/4.0/legalcode.
201 changes: 172 additions & 29 deletions ontology/scidata.owl
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<AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
<Literal xml:lang="en" datatypeIRI="http://www.w3.org/1999/02/22-rdf-syntax-ns#PlainLiteral">The Scientific Data Model Ontology (SDMO) is an ontology that describes the framework of a generic data model for scientific data. For more information go to http://stuchalk.github.io/scidata.</Literal>
</Annotation>
<Annotation>
<AnnotationProperty IRI="http://purl.org/dc/elements/1.1/format"/>
<Literal xml:lang="en" datatypeIRI="http://www.w3.org/1999/02/22-rdf-syntax-ns#PlainLiteral">OWL-DL</Literal>
</Annotation>
<Annotation>
<AnnotationProperty IRI="http://purl.org/dc/elements/1.1/license"/>
<Literal xml:lang="en" datatypeIRI="http://www.w3.org/1999/02/22-rdf-syntax-ns#PlainLiteral">http://creativecommons.org/licenses/by/3.0/</Literal>
</Annotation>
<Annotation>
<AnnotationProperty IRI="http://purl.org/dc/elements/1.1/format"/>
<Literal xml:lang="en" datatypeIRI="http://www.w3.org/1999/02/22-rdf-syntax-ns#PlainLiteral">OWL-DL</Literal>
</Annotation>
<Annotation>
<AnnotationProperty abbreviatedIRI="owl:versionInfo"/>
<Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#string">0.1</Literal>
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<Declaration>
<Class IRI="#condition"/>
</Declaration>
<Declaration>
<Class IRI="#context"/>
</Declaration>
<Declaration>
<Class IRI="#contextFacet"/>
</Declaration>
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<Declaration>
<Class IRI="#permalink"/>
</Declaration>
<Declaration>
<Class IRI="#procedure"/>
</Declaration>
<Declaration>
<Class IRI="#property"/>
</Declaration>
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<Declaration>
<Class IRI="#starttime"/>
</Declaration>
<Declaration>
<Class IRI="#system"/>
</Declaration>
<Declaration>
<Class IRI="#text"/>
</Declaration>
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<Declaration>
<Class IRI="https://schema.org/URL"/>
</Declaration>
<Declaration>
<ObjectProperty IRI="#hasAspect"/>
</Declaration>
<Declaration>
<ObjectProperty IRI="#hasDatagroup"/>
</Declaration>
<Declaration>
<ObjectProperty IRI="#hasDatapoint"/>
</Declaration>
<Declaration>
<ObjectProperty IRI="#hasDataseries"/>
</Declaration>
<Declaration>
<ObjectProperty IRI="#hasDataset"/>
</Declaration>
<Declaration>
<ObjectProperty IRI="#hasFacet"/>
</Declaration>
<Declaration>
<ObjectProperty IRI="#hasMethodology"/>
</Declaration>
<Declaration>
<ObjectProperty IRI="#hasRights"/>
</Declaration>
<Declaration>
<ObjectProperty IRI="#hasSource"/>
</Declaration>
<Declaration>
<ObjectProperty IRI="#hasSystem"/>
</Declaration>
<Declaration>
<ObjectProperty IRI="#hasTOC"/>
</Declaration>
<Declaration>
<NamedIndividual IRI="#imperial"/>
</Declaration>
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<Class IRI="#condition"/>
<Class IRI="#contextFacet"/>
</SubClassOf>
<SubClassOf>
<Class IRI="#context"/>
<Class abbreviatedIRI="obo:IAO_0000030"/>
</SubClassOf>
<SubClassOf>
<Class IRI="#contextFacet"/>
<Class IRI="#context"/>
<Class IRI="#system"/>
</SubClassOf>
<SubClassOf>
<Class IRI="#conversionFactor"/>
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<Class IRI="#permalink"/>
<Class IRI="#metadata"/>
</SubClassOf>
<SubClassOf>
<Class IRI="#procedure"/>
<Class IRI="#methodologyAspect"/>
</SubClassOf>
<SubClassOf>
<Class IRI="#property"/>
<Class IRI="#scientificData"/>
Expand All @@ -745,11 +781,11 @@
</SubClassOf>
<SubClassOf>
<Class IRI="#scientificDiscipline"/>
<Class IRI="#context"/>
<Class IRI="#system"/>
</SubClassOf>
<SubClassOf>
<Class IRI="#scientificSubdiscipline"/>
<Class IRI="#context"/>
<Class IRI="#system"/>
</SubClassOf>
<SubClassOf>
<Class IRI="#siPrefix"/>
Expand All @@ -775,6 +811,10 @@
<Class IRI="#starttime"/>
<Class abbreviatedIRI="bfo11snap:Occurrent"/>
</SubClassOf>
<SubClassOf>
<Class IRI="#system"/>
<Class abbreviatedIRI="obo:IAO_0000030"/>
</SubClassOf>
<SubClassOf>
<Class IRI="#text"/>
<Class IRI="#dataset"/>
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<Class abbreviatedIRI="bfo11snap:Continuant"/>
<Class abbreviatedIRI="bfo11snap:Occurrent"/>
</DisjointClasses>
<ObjectPropertyDomain>
<ObjectProperty IRI="#hasAspect"/>
<Class IRI="#methodology"/>
</ObjectPropertyDomain>
<ObjectPropertyDomain>
<ObjectProperty IRI="#hasDatagroup"/>
<Class IRI="#dataset"/>
</ObjectPropertyDomain>
<ObjectPropertyDomain>
<ObjectProperty IRI="#hasDatapoint"/>
<Class IRI="#dataset"/>
</ObjectPropertyDomain>
<ObjectPropertyDomain>
<ObjectProperty IRI="#hasDataseries"/>
<Class IRI="#dataSeries"/>
</ObjectPropertyDomain>
<ObjectPropertyDomain>
<ObjectProperty IRI="#hasDataseries"/>
<Class IRI="#dataset"/>
</ObjectPropertyDomain>
<ObjectPropertyDomain>
<ObjectProperty IRI="#hasDataset"/>
<Class IRI="#scientificData"/>
</ObjectPropertyDomain>
<ObjectPropertyDomain>
<ObjectProperty IRI="#hasFacet"/>
<Class IRI="#system"/>
</ObjectPropertyDomain>
<ObjectPropertyDomain>
<ObjectProperty IRI="#hasMethodology"/>
<Class IRI="#scientificData"/>
</ObjectPropertyDomain>
<ObjectPropertyDomain>
<ObjectProperty IRI="#hasSystem"/>
<Class IRI="#scientificData"/>
</ObjectPropertyDomain>
<ObjectPropertyRange>
<ObjectProperty IRI="#hasAspect"/>
<Class IRI="#methodologyAspect"/>
</ObjectPropertyRange>
<ObjectPropertyRange>
<ObjectProperty IRI="#hasDatagroup"/>
<Class IRI="#dataGroup"/>
</ObjectPropertyRange>
<ObjectPropertyRange>
<ObjectProperty IRI="#hasDatapoint"/>
<Class IRI="#dataPoint"/>
</ObjectPropertyRange>
<ObjectPropertyRange>
<ObjectProperty IRI="#hasDataset"/>
<Class IRI="#dataset"/>
</ObjectPropertyRange>
<ObjectPropertyRange>
<ObjectProperty IRI="#hasFacet"/>
<Class IRI="#contextFacet"/>
</ObjectPropertyRange>
<ObjectPropertyRange>
<ObjectProperty IRI="#hasMethodology"/>
<Class IRI="#methodology"/>
</ObjectPropertyRange>
<ObjectPropertyRange>
<ObjectProperty IRI="#hasRights"/>
<Class abbreviatedIRI="dc:accessRights"/>
</ObjectPropertyRange>
<ObjectPropertyRange>
<ObjectProperty IRI="#hasSource"/>
<Class abbreviatedIRI="dc:source"/>
</ObjectPropertyRange>
<ObjectPropertyRange>
<ObjectProperty IRI="#hasSystem"/>
<Class IRI="#system"/>
</ObjectPropertyRange>
<ObjectPropertyRange>
<ObjectProperty IRI="#hasTOC"/>
<Class abbreviatedIRI="dc:tableOfContents"/>
</ObjectPropertyRange>
<DisjointObjectProperties>
<ObjectProperty IRI="#hasDataset"/>
<ObjectProperty IRI="#hasMethodology"/>
</DisjointObjectProperties>
<DisjointObjectProperties>
<ObjectProperty IRI="#hasDataset"/>
<ObjectProperty IRI="#hasSystem"/>
</DisjointObjectProperties>
<DisjointObjectProperties>
<ObjectProperty IRI="#hasMethodology"/>
<ObjectProperty IRI="#hasSystem"/>
</DisjointObjectProperties>
<AnnotationAssertion>
<AnnotationProperty abbreviatedIRI="oboowl:id"/>
<AbbreviatedIRI>obo:CHEBI_37577</AbbreviatedIRI>
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<IRI>#condition</IRI>
<Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#string">condition</Literal>
</AnnotationAssertion>
<AnnotationAssertion>
<AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
<IRI>#context</IRI>
<Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#string">Metadata describing the systems, organisms, or material under study and the conditions (properties) under which the study was conducted</Literal>
</AnnotationAssertion>
<AnnotationAssertion>
<AnnotationProperty abbreviatedIRI="oboowl:id"/>
<IRI>#context</IRI>
<Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#string">context</Literal>
</AnnotationAssertion>
<AnnotationAssertion>
<AnnotationProperty abbreviatedIRI="rdfs:label"/>
<IRI>#context</IRI>
<Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#string">context</Literal>
</AnnotationAssertion>
<AnnotationAssertion>
<AnnotationProperty abbreviatedIRI="obo:IAO_0000115"/>
<IRI>#contextFacet</IRI>
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<IRI>#permalink</IRI>
<Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#string">permalink</Literal>
</AnnotationAssertion>
<AnnotationAssertion>
<AnnotationProperty abbreviatedIRI="obo:IAO_0000115"/>
<IRI>#procedure</IRI>
<Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#string">A list steps describing how to perform as specific task or tasks</Literal>
</AnnotationAssertion>
<AnnotationAssertion>
<AnnotationProperty abbreviatedIRI="oboowl:id"/>
<IRI>#procedure</IRI>
<Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#string">procedure</Literal>
</AnnotationAssertion>
<AnnotationAssertion>
<AnnotationProperty abbreviatedIRI="rdfs:label"/>
<IRI>#procedure</IRI>
<Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#string">procedure</Literal>
</AnnotationAssertion>
<AnnotationAssertion>
<AnnotationProperty abbreviatedIRI="obo:IAO_0000115"/>
<IRI>#property</IRI>
Expand Down Expand Up @@ -2521,6 +2649,21 @@
<IRI>#starttime</IRI>
<Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#string">start time</Literal>
</AnnotationAssertion>
<AnnotationAssertion>
<AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
<IRI>#system</IRI>
<Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#string">Metadata describing the system(s) that the scientific study is is focused on. Can be molecular or chemical systems, organisms, or materials and the conditions (properties) under which the study was conducted.</Literal>
</AnnotationAssertion>
<AnnotationAssertion>
<AnnotationProperty abbreviatedIRI="oboowl:id"/>
<IRI>#system</IRI>
<Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#string">system</Literal>
</AnnotationAssertion>
<AnnotationAssertion>
<AnnotationProperty abbreviatedIRI="rdfs:label"/>
<IRI>#system</IRI>
<Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#string">system</Literal>
</AnnotationAssertion>
<AnnotationAssertion>
<AnnotationProperty abbreviatedIRI="obo:IAO_0000115"/>
<IRI>#text</IRI>
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