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Fixing a few bugs in ReadConverter #45

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merged 1 commit into from
Mar 31, 2015

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lbergelson
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Adding a more comprehensive test for ReadConverter
Added gat-tools-java as a dependency to access the Read->SAMRecord converter

Adding a more comprehensive test for ReadConverter
Added gat-tools-java as a dependency to access the Read->SAMRecord converter
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Coverage increased (+1.3%) to 25.76% when pulling 0a20aa7 on lbergelson:lb_ReadConverterFix into d8b04b5 on googlegenomics:master.

import htsjdk.samtools.CigarOperator;
import htsjdk.samtools.SAMException;
import htsjdk.samtools.SAMRecord;
import htsjdk.samtools.*;
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We prefer to avoid wildcard imports (Google Java style)

@wbrockman
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Nice! Good test makes me happy.

wbrockman added a commit that referenced this pull request Mar 31, 2015
Fixing a few bugs in ReadConverter and adding a new test for Sam -> Read -> Sam conversion.
@wbrockman wbrockman merged commit 48b0bad into googlegenomics:master Mar 31, 2015
@lbergelson
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@wbrockman You merged, did you want me to add that comment and fix the spacing?

@wbrockman
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Yes please - sorry, crossing up my different review workflows.

On Tue, Mar 31, 2015 at 10:26 AM, Louis Bergelson [email protected]
wrote:

@wbrockman https://github.com/wbrockman You merged, did you want me to
add that comment and fix the spacing?


Reply to this email directly or view it on GitHub
#45 (comment)
.

@pgrosu
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pgrosu commented Mar 31, 2015

This line is my favorite :)

    10  @RG     ID:0    SM:Hi,Momma!    LB:whatever     PU:me   PL:ILLUMINA

jiridanek pushed a commit to jiridanek/dataflow-java that referenced this pull request Jan 18, 2016
Fixing a few bugs in ReadConverter and adding a new test for Sam -> Read -> Sam conversion.
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4 participants