Initial commit.

Gemfile

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+source "https://rubygems.org"
+# Hello! This is where you manage which Jekyll version is used to run.
+# When you want to use a different version, change it below, save the
+# file and run `bundle install`. Run Jekyll with `bundle exec`, like so:
+#
+#     bundle exec jekyll serve
+#
+# This will help ensure the proper Jekyll version is running.
+# Happy Jekylling!
+gem "jekyll", "~> 4.0.0"
+# This is the default theme for new Jekyll sites. You may change this to anything you like.
+gem "minima", "~> 2.5"
+# If you want to use GitHub Pages, remove the "gem "jekyll"" above and
+# uncomment the line below. To upgrade, run `bundle update github-pages`.
+# gem "github-pages", group: :jekyll_plugins
+# If you have any plugins, put them here!
+group :jekyll_plugins do
+	gem "jekyll-scholar"
+	gem "jekyll-sitemap"
+	gem "jekyll-feed"
+	gem "jekyll-katex"
+end
+
+# Windows and JRuby does not include zoneinfo files, so bundle the tzinfo-data gem
+# and associated library.
+install_if -> { RUBY_PLATFORM =~ %r!mingw|mswin|java! } do
+	gem "tzinfo", "~> 1.2"
+	gem "tzinfo-data"
+end
+
+# Performance-booster for watching directories on Windows
+gem "wdm", "~> 0.1.1", :install_if => Gem.win_platform?

Gemfile.lock

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+GEM
+  remote: https://rubygems.org/
+  specs:
+    addressable (2.7.0)
+      public_suffix (>= 2.0.2, < 5.0)
+    bibtex-ruby (5.0.1)
+      latex-decode (~> 0.0)
+    citeproc (1.0.10)
+      namae (~> 1.0)
+    citeproc-ruby (1.1.10)
+      citeproc (~> 1.0, >= 1.0.9)
+      csl (~> 1.5)
+    colorator (1.1.0)
+    concurrent-ruby (1.1.5)
+    csl (1.5.1)
+      namae (~> 1.0)
+    csl-styles (1.0.1.10)
+      csl (~> 1.0)
+    em-websocket (0.5.1)
+      eventmachine (>= 0.12.9)
+      http_parser.rb (~> 0.6.0)
+    eventmachine (1.2.7)
+    execjs (2.7.0)
+    ffi (1.11.3)
+    forwardable-extended (2.6.0)
+    http_parser.rb (0.6.0)
+    i18n (1.8.2)
+      concurrent-ruby (~> 1.0)
+    jekyll (4.0.0)
+      addressable (~> 2.4)
+      colorator (~> 1.0)
+      em-websocket (~> 0.5)
+      i18n (>= 0.9.5, < 2)
+      jekyll-sass-converter (~> 2.0)
+      jekyll-watch (~> 2.0)
+      kramdown (~> 2.1)
+      kramdown-parser-gfm (~> 1.0)
+      liquid (~> 4.0)
+      mercenary (~> 0.3.3)
+      pathutil (~> 0.9)
+      rouge (~> 3.0)
+      safe_yaml (~> 1.0)
+      terminal-table (~> 1.8)
+    jekyll-feed (0.13.0)
+      jekyll (>= 3.7, < 5.0)
+    jekyll-katex (1.0.0)
+      execjs (~> 2.7)
+      jekyll (>= 3.6, < 5.0)
+    jekyll-sass-converter (2.0.1)
+      sassc (> 2.0.1, < 3.0)
+    jekyll-scholar (6.5.1)
+      bibtex-ruby (~> 5.0)
+      citeproc-ruby (~> 1.0)
+      csl-styles (~> 1.0)
+      jekyll (~> 4.0)
+    jekyll-seo-tag (2.6.1)
+      jekyll (>= 3.3, < 5.0)
+    jekyll-sitemap (1.4.0)
+      jekyll (>= 3.7, < 5.0)
+    jekyll-watch (2.2.1)
+      listen (~> 3.0)
+    kramdown (2.1.0)
+    kramdown-parser-gfm (1.1.0)
+      kramdown (~> 2.0)
+    latex-decode (0.3.1)
+    liquid (4.0.3)
+    listen (3.2.1)
+      rb-fsevent (~> 0.10, >= 0.10.3)
+      rb-inotify (~> 0.9, >= 0.9.10)
+    mercenary (0.3.6)
+    minima (2.5.1)
+      jekyll (>= 3.5, < 5.0)
+      jekyll-feed (~> 0.9)
+      jekyll-seo-tag (~> 2.1)
+    namae (1.0.1)
+    pathutil (0.16.2)
+      forwardable-extended (~> 2.6)
+    public_suffix (4.0.3)
+    rb-fsevent (0.10.3)
+    rb-inotify (0.10.1)
+      ffi (~> 1.0)
+    rouge (3.14.0)
+    safe_yaml (1.0.5)
+    sassc (2.2.1)
+      ffi (~> 1.9)
+    terminal-table (1.8.0)
+      unicode-display_width (~> 1.1, >= 1.1.1)
+    thread_safe (0.3.6)
+    tzinfo (1.2.6)
+      thread_safe (~> 0.1)
+    tzinfo-data (1.2019.3)
+      tzinfo (>= 1.0.0)
+    unicode-display_width (1.6.0)
+    wdm (0.1.1)
+
+PLATFORMS
+  ruby
+
+DEPENDENCIES
+  jekyll (~> 4.0.0)
+  jekyll-feed
+  jekyll-katex
+  jekyll-scholar
+  jekyll-sitemap
+  minima (~> 2.5)
+  tzinfo (~> 1.2)
+  tzinfo-data
+  wdm (~> 0.1.1)
+
+BUNDLED WITH
+   2.1.3

README.md

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+Files necessary to replicate my blog, [http://gregorygundersen.com/blog/](http://gregorygundersen.com/blog/). For details, see [this post](http://gregorygundersen.com/blog/2020/06/21/blog-theme)

_bibliography/references.bib

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+---
+---
+References
+==========
+
+@article{bishop2006pattern,
+  title={Pattern Recognition and Machine Learning},
+  author={Bishop, Christopher M},
+  year={2006},
+  publisher={Springer}
+}

_config.yml

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+highlighter: rouge
+permalink: /blog/:year/:month/:day/:title/
+environment: prod
+url: "http://gregorygundersen.com"  # Sitemap base URL.
+plugins:
+  - jekyll-scholar
+  - jekyll-sitemap
+  - jekyll-feed
+  - jekyll-katex
+katex:
+  js_path: "assets"  # Path used to search for katex.min.js
+  rendering_options:
+    # Default KaTeX rendering options. See https://github.com/Khan/KaTeX#rendering-options
+    throw_error: false      # throwOnError - set to false if you want rendering to output error as text rather than a build error
+    error_color: "#cc0000"  # errorColor

_includes/mathjax.html

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+<script type='text/x-mathjax-config'>
+MathJax.Hub.Config({
+  jax: ['input/TeX', 'output/HTML-CSS'],
+  tex2jax: {
+    inlineMath: [ ['$', '$'] ],
+    displayMath: [ ['$$', '$$']],
+    processEscapes: true,
+    skipTags: ['script', 'noscript', 'style', 'textarea', 'pre', 'code'],
+    extensions: ['color.js']
+  },
+  messageStyle: 'none',
+  'HTML-CSS': { preferredFont: 'TeX', availableFonts: ['STIX','TeX'] }
+});
+</script>
+
+<script src='//cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS_HTML' type='text/javascript'></script>
+<link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/[email protected]/dist/katex.min.css" integrity="sha384-zB1R0rpPzHqg7Kpt0Aljp8JPLqbXI3bhnPWROx27a9N0Ll6ZP/+DiW/UqRcLbRjq" crossorigin="anonymous">

_includes/nav.html

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+<div class='nav'>
+    <ul class='wrap'>
+        <li><a href='/'>Home</a></li>
+        <li><a href='/blog'>Blog</a></li>
+        <li><a href='/feed.xml'>RSS</a></li>
+    </ul>
+</div>

_layouts/default.html

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+<html>
+<head>
+    <title>{{ page.title }}</title>
+    <meta charset='UTF-8'>
+    <meta content='width=device-width, initial-scale=1' name='viewport'/>
+
+    <meta name='description' content='Gregory Gundersen is a PhD candidate at Princeton.'>
+    <meta name='keywords' content='{{ page.keywords }}'>
+    <meta name='author' content='Gregory Gundersen'>
+
+    <link href='/css/blog.css' rel='stylesheet'/>
+    <link href='/css/trac.css' rel='stylesheet'/>
+    <link href='/css/markdown.css' rel='stylesheet'/>
+
+    {% include mathjax.html %}
+</head>
+<body>
+<div class='content'>
+    {% include nav.html %}
+    <div class='front-matter'>
+        <div class='wrap'>
+            <h1>{{ page.title }}</h1>
+            <h4>{{ page.subtitle }}</h4>
+            <div class='bylines'>
+                <div class='byline'>
+                    <h3>Published</h3>
+                    <p>{{ page.date |  date: '%d %B %Y' }}</p>
+                </div>
+            </div>
+            <div class='clear'></div>
+        </div>
+    </div>
+    <div class='wrap article'>
+        {{ content }}
+    </div>
+    <div id='bibliography'>
+        <div class='wrap'>
+            {% bibliography --cited %}
+        </div>
+    </div>
+</div>
+</body>
+</html>

_posts/2020-06-21-example.md

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+---
+title: An Example Post
+subtitle: Here is some extra detail about the post.
+layout: default
+date: 2020-06-21
+keywords: blogging, writing
+published: true
+---
+
+Here are some words. And this is some math:
+
+{% katexmm %}
+e = mc^2. \tag{1}
+{% endkatexmm %}
+
+Cool!