amber: QC file UniparentalDisomy prints "NONE" instead of null

hartwigmedical · Mar 16, 2022 · ac7a7af · ac7a7af
1 parent 4e80cec
commit ac7a7af
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Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/amber/README.md b/amber/README.md
@@ -209,6 +209,7 @@ Peak memory is measure in gigabytes.
 - [3.8](https://github.com/hartwigmedical/hmftools/releases/tag/amber-v3.8)
   - Added workaround for a bug in R copy_number module pcf function 
   - Fixed `NullPointerException` in tumor only mode
+  - Change QC file UniparentalDisomy prints NONE instead of null
 - [3.7](https://github.com/hartwigmedical/hmftools/releases/tag/amber-v3.7)
   - Fixed `NullPointerException` when no `-ref_genome` argument is provided
 - [3.6](https://github.com/hartwigmedical/hmftools/releases/tag/amber-v3.6)

diff --git a/hmf-common/src/main/java/com/hartwig/hmftools/common/amber/qc/AmberQCFile.java b/hmf-common/src/main/java/com/hartwig/hmftools/common/amber/qc/AmberQCFile.java
@@ -60,7 +60,7 @@ private static List<String> toLines(@NotNull final AmberQC check) {
         result.add("MeanBAF" + DELIMITER + FORMAT.format(check.meanBAF()));
         result.add("Contamination" + DELIMITER + FORMAT.format(check.contamination()));
         result.add("ConsanguinityProportion" + DELIMITER + FORMAT.format(check.consanguinityProportion()));
-        result.add("UniparentalDisomy" + DELIMITER + (check.uniparentalDisomy() != null ? check.uniparentalDisomy() : "null"));
+        result.add("UniparentalDisomy" + DELIMITER + (check.uniparentalDisomy() != null ? check.uniparentalDisomy() : "NONE"));
 
         return result;
     }