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values.yaml
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# Default values for appstore.
# This is a YAML-formatted file.
# Declare variables to be passed into your templates.
replicaCount: 1
image:
# -- repository where image is located
repository: containers.renci.org/helxplatform/appstore
# -- pull policy
pullPolicy: IfNotPresent
# -- Overrides the image tag whose default is the chart appVersion.
# Set to "" before release!
tag:
imagePostgresql:
# -- repository where postgresql image is located
repository: docker.io/bitnami/postgresql
# -- pull policy
pullPolicy: IfNotPresent
# -- Image tag for postgresql, coordinate this with postgresql dependency.
tag: 11
fetcherImage:
# -- repository where image is located
repository: helxplatform/url-fetch
# -- pull policy
pullPolicy: IfNotPresent
# Overrides the image tag whose default is the chart appVersion.
tag: latest
# -- credentials for a private repo
imagePullSecrets: []
nameOverride: ""
fullnameOverride: ""
networkPolicyLabels: {"role": "appstore"}
podAnnotations: {}
# An empty string equates to false, anything else is true. If debug is true the logLevel is also set to DEBUG.
debug: ""
# -- Set the log level for the application. (DEBUG INFO WARNING ERROR CRITICAL)
logLevel: "WARNING"
updateStrategy:
# -- 'RollingUpdate' or 'Recreate'. Must use Recreate if mounting PVCs due to multi-attach errors.
type: Recreate
serviceAccount:
# -- specifies whether a service account should be created
create: true
# -- The name of the service account to use.
# If not set and create is true, a name is generated using the fullname template
name:
podSecurityContext: {}
service:
type: ClusterIP
port: 80
name: http
resources:
limits:
cpu: 500m
memory: 1024Mi
requests:
cpu: 200m
memory: 300Mi
security:
isolatedApps: true
# -- Choose http or https for the protocol that is used by external users to access
# the appstore web service.
ACCOUNT_DEFAULT_HTTP_PROTOCOL: http
# -- Set environment variables from a file.
SET_BUILD_ENV_FROM_FILE: false
nodeSelector: {}
tolerations: []
affinity: {}
ambassador:
# -- register appstore with ambassador flag: <True or False>
flag: true
# -- set the theme for appstore (bdc, braini, restartr, scidas)
djangoSettings: helx
# -- Allow for a custom entrypoint command via the values file.
appstoreEntrypointArgs: "make start"
gunicorn:
# -- Set the number of gunicorn workers. (2*CPU)+1 is recommended.
workers: 5
django:
# -- Note that these only run on a user's primary alias.
# If a user has [email protected] as their primary alias,
# and [email protected] as a secondary alias, they will only
# be whitelisted automatically if cs.unc.edu emails are allowed.
# ex. Whitelist all RENCI emails - "^[A-Za-z0-9._%+-]+@renci\\.org$"
# ex. Whitelist all UNC emails - "^[A-Za-z0-9._%+-]+@([A-Za-z0-9.-]+\\.)?unc\\.edu$"
# ex. Whitelist CS dept. (grad./prof.) UNC emails - "^[A-Za-z0-9._%+-]+@cs\\.unc\\.edu$"
AUTO_WHITELIST_PATTERNS: []
# -- user emails for oauth providers
AUTHORIZED_USERS: ""
# -- user emails to remove from an already-existing database
REMOVE_AUTHORIZED_USERS: ""
# -- Specify the git branch to use for HeLx app specifications. When
# declaring 'tycho.externalAppRegistryRepo' leave this as an empty string.
DOCKSTORE_APPS_BRANCH: "v1.6.0"
###################################################
APPSTORE_DJANGO_USERNAME: "admin"
APPSTORE_DJANGO_PASSWORD: ""
# -- show Django log in fields (true | false)
ALLOW_DJANGO_LOGIN: ""
# -- show SAML log in fields (true | false)
ALLOW_SAML_LOGIN: ""
# -- Email Server host ie relay.unc.edu | relay.renci.org
EMAIL_HOST: ""
# -- Email Server port ie 25 or other.
EMAIL_PORT: ""
# -- Does the Email Server require TLS connection or not? Boolean (true | false)
EMAIL_USE_TLS: False
# -- email of account to use for outgoing emails
EMAIL_HOST_USER: ""
# -- password of account to use for outgoing emails
EMAIL_HOST_PASSWORD: ""
# -- Specify URL to use for the "Image Download" link on the top part of website.
IMAGE_DOWNLOAD_URL: ""
# -- idle timeout for user web session
SESSION_IDLE_TIMEOUT: "2592000" # 30 days
# -- list of appstore registration emails
RECIPIENT_EMAILS: ""
# -- should be 'live' unless you are doing some kind of development
DEV_PHASE: "live"
oauth:
# -- oauth providers separated by commas (google, github)
OAUTH_PROVIDERS: ""
GITHUB_NAME: ""
GITHUB_KEY: ""
GITHUB_SITES: ""
GITHUB_CLIENT_ID: ""
GITHUB_SECRET: ""
GOOGLE_NAME: ""
GOOGLE_KEY: ""
GOOGLE_SITES: ""
GOOGLE_CLIENT_ID: ""
GOOGLE_SECRET: ""
saml:
cache:
enabled: false
claimName: "saml-cache"
storageSize: "20M"
storageClass: ""
FETCH_FILE: "/data/saml_metadata.xml"
FETCH_INTERVAL: "60000"
APPSTORE_DIRECTORY: "/saml"
APPSTORE_FILE: "saml_metadata.xml"
AUTHORITY_URL: ""
ASSERTION_URL: ""
ENTITY_ID: ""
irods:
# -- enable irods support (true | false)
enabled: false
BRAINI_RODS: ""
NRC_MICROSCOPY_IRODS: ""
RODS_USERNAME: ""
RODS_PASSWORD: ""
IROD_COLLECTIONS: ""
IROD_ZONE: ""
irodsUnbranded:
enabled: false
RODS_USERNAME: ""
RODS_PASSWORD: ""
IROD_ZONE: ""
IROD_PORT: ""
IROD_HOST: ""
IROD_USER_VALUES: {}
NFSRODS_HOST: ""
apps:
DICOMGH_GOOGLE_CLIENT_ID: ""
DATASOURCE_CONNECTION_URL: ""
DATASOURCE_PASSWORD: ""
FLYWAY_DATASOURCE_CONNECTION_URL: ""
FLYWAY_DATASOURCE_PASSWORD: ""
DATASOURCE_USERNAME: "ohdsi"
FLYWAY_DATASOURCE_USERNAME: "ohdsi"
# -- PUID variable in webtop specifies the UID to switch the user to after
# initialization.
WEBTOP_PUID: "1000"
# -- PGID variable in webtop specifies the GID to switch the user to after
# initialization.
WEBTOP_PGID: "1000"
# -- Specify email for pgAdmin user.
PGADMIN_EMAIL: "[email protected]"
# -- Specify the database hostname used for pgAdmin's clients to connect to.
# If specified this replaces 'mimic-postgresql' in the pgadmin4.db
# configuration file.
HELX_DB_HOSTNAME: ""
PGADMIN_DISABLE_POSTFIX: "true"
PGADMIN_LISTEN_PORT: "80"
# -- Settings for django sqlite3 db file persistence, if postgresql is not enabled (postgresql.enabled: false).
sqliteStorage:
# -- If a claim name is not specified, it defaults to appstore-oauth-pvc.
claimName:
storageClass:
# -- Settings for django logs persistence.
logsStorageAppstore:
createPVC: false
# -- Set to true if a claim has been created outside of the appstore chart.
existingClaim: false
# -- Specify the claim name if it pre-exists or it defaults to appstore-logs-pvc.
claimName:
storageSize: 2Gi
storageClass:
userStorage:
# -- Create a PVC for user's files. If false then the PVC needs to be created
# outside of the appstore chart.
createPVC: true
retain: true
storageSize: 10Gi
storageClass:
nfs:
createPV: false
path:
server:
# Add any extra environment variables not already defined in the chart.
extraEnv: {}
# -- Set to true, when using blackbalsam.
useSparkServiceAccount: false
tycho:
# -- Application processes launched will run as this user.
runAsUser: 0
# -- Application processes launched will have this group permissions.
runAsGroup: 0
# -- Application processes launched will also be part of this supplimentary group.
fsGroup: 0
# -- Start the init container to take care of any needed tasks before the
# main container is started. This can be to create certain directories or
# set file permissions.
enableInitContainer: true
# -- The image repository to use for HeLx app init containers.
initImageRepository: busybox
# -- The image tag to use for HeLx app init containers.
initImageTag: latest
# -- Init processes will run as this user.
initRunAsUser: 0
# -- Init processes will have this group permissions.
initRunAsGroup: 0
# -- Create Home and shared directories for users.
createHomeDirs: true
# -- directory that will be used to mount user's home directories in
parent_dir: "/home"
# -- Name of directory to use for a user's home directory. If null then the
# user's username will be used.
subpath_dir: null
# -- name of directory to use for shared data
shared_dir: "shared"
# -- Resource for Tycho init container. Defaults cpus|250m memory|250Mi
init:
resources:
cpus: 250m
memory: 250Mi
# -- The GPU resource name that a container can utilize. Typically this is
# "nvidia.com/gpu", but other types exist, such as "nvidia.com/mig-1g.5gb"
# and other manufacturers have their own types.
GPUResourceName: "nvidia.com/gpu"
# -- Enable/disable the external app registry file for Tycho. Set
# 'django.DOCKSTORE_APPS_BRANCH' to an empty string when when using an
# external app registry.
externalAppRegistryEnabled: false
# -- Can be set to a git repo URL for fetching the app registry file or
# defaults file. Something in the form of
# 'https://github.com/helxplatform/helx-apps/raw'.
externalAppRegistryRepo: "https://github.com/helxplatform/helx-apps/raw"
# -- The branch that would be appended to 'externalAppRegistryRepo' to
# retrieve the app registry and defaults files. The full URL, if using the
# externalAppRegistryRepo example for the app registry file would be
# 'https://github.com/helxplatform/helx-apps/raw/master/app-registry.yaml'.
# The default value is the AppVersion of this chart prefixed with a 'v'
# (ex. v2.0.0).
externalAppRegistryBranch:
externalAppRegistryAppSpecsDir: "app-specs"
global:
# -- the name of the PVC to use for user's files
stdnfsPvc: stdnfs
# -- specify the id of the ambassador for Tycho-launched services.
ambassador_id:
#############################################################################
# -- appstore database settings
db:
name: appstore
host: postgresql
port: 5432
# -- postgresql settings
postgresql:
enabled: true
global:
# -- postgresql credentials
postgresql:
auth:
postgresPassword: "adminPass"
database: "appstore-oauth"
username: "renci"
password: "renciAdmin"
# -- postgresql labels
primary:
labels: {"np-label": "appstore-db"}
podLabels: {"np-label": "appstore-db"}
# -- postgresql logs
audit:
logHostname: true
logConnections: true
# -- postgresql persistence storage
persistence:
existingClaim: "appstore-postgresql-pvc"
storageClass:
volumePermissions:
enabled: true
# -- enable/disable postgresql network policy, allows traffic to and from appstore pod only.
networkPolicyEnabled: true
# -- gitea settings
gitea:
# -- set whether a gitea connection is enabled
enabled: false
# -- the hostname of the gitea server
host: eduhelx-git.apps.renci.org
# -- the default user that gets populated in the gitea ssh config file
user: git
# -- the name of service in Kubernetes to connect to gitea
serviceName: gitea-ssh