Update GitHub Actions to install Matrix and irlba from source

igordot · Nov 28, 2023 · 1df8bc7 · 1df8bc7
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commit 1df8bc7
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diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -39,6 +39,14 @@ jobs:
           http-user-agent: ${{ matrix.config.http-user-agent }}
           use-public-rspm: true
 
+      # changes in Matrix 1.6-2 break irlba, install both from source
+      # https://github.com/bwlewis/irlba/issues/70
+      - name: Install specific R dependencies
+        run: |
+          install.packages("Matrix", type = "source")
+          install.packages("irlba", type = "source")
+        shell: Rscript {0}
+
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
           extra-packages: any::rcmdcheck

diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
@@ -28,6 +28,14 @@ jobs:
         with:
           use-public-rspm: true
 
+      # changes in Matrix 1.6-2 break irlba, install both from source
+      # https://github.com/bwlewis/irlba/issues/70
+      - name: Install specific R dependencies
+        run: |
+          install.packages("Matrix", type = "source")
+          install.packages("irlba", type = "source")
+        shell: Rscript {0}
+
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
           extra-packages: any::pkgdown, local::.