-
Notifications
You must be signed in to change notification settings - Fork 0
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Feature/consistent oud treatment #2
Open
aflaxman
wants to merge
23
commits into
main
Choose a base branch
from
feature/consistent_oud_treatment
base: main
Could not load branches
Branch not found: {{ refName }}
Loading
Could not load tags
Nothing to show
Loading
Are you sure you want to change the base?
Some commits from the old base branch may be removed from the timeline,
and old review comments may become outdated.
Open
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
see 2024_10_30b_test_dismod_for_consistent_artifact_data.ipynb for example
see 2024_10_30b_test_dismod_for_consistent_artifact_data.ipynb for details
tweak model specs to test this more
…run with:: python src/vivarium_nih_moud/data/dismod_at.py
…standing of how yaml works.
albrja
approved these changes
Jan 3, 2025
vnv shows diff between p and csmr from artifact to sim, not sure why
…ee if this gets back to the simpler consistent model
…n't know why, or if the consistent values will be acceptable
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Title: Use NumPyro implementation of DisMod-AT to get consistent rates for OUD model, including an on-treatment state
Description
Changes and notes
Add code for generating artifact keys, as well as for using them in an MOUD componentVerification and Testing
It runs successfully with `simulate run -v --pdb src/vivarium_nih_moud/model_specifications/model_spec.yaml`; I'll do a V&V run on the cluster with it next.