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Bump conda-incubator/setup-miniconda from 2 to 3 #308

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merged 2 commits into from
Dec 11, 2023
Merged

Bump conda-incubator/setup-miniconda from 2 to 3 #308

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38eb37f
Bump conda-incubator/setup-miniconda from 2 to 3
dependabot[bot] Nov 27, 2023
dcc2468
use Miniforge3 instead of mambaforge
k-dominik Nov 28, 2023
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2 changes: 1 addition & 1 deletion .github/workflows/deploy.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ jobs:
- uses: actions/checkout@v4
with:
fetch-depth: 0
- uses: conda-incubator/setup-miniconda@v2
- uses: conda-incubator/setup-miniconda@v3
with:
auto-update-conda: true
auto-activate-base: true
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7 changes: 7 additions & 0 deletions .github/workflows/etc/build-env.yaml
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@@ -0,0 +1,7 @@
channels:
- conda-forge
- ilastik-forge
dependencies:
- conda-build
- setuptools_scm
- boa
1 change: 0 additions & 1 deletion .github/workflows/etc/ilastik-env.yaml
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@@ -1,4 +1,3 @@
name: ilastik-env
channels:
- conda-forge
- ilastik-forge
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2 changes: 1 addition & 1 deletion .github/workflows/lint.yml
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Expand Up @@ -11,7 +11,7 @@ jobs:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v2
- uses: conda-incubator/setup-miniconda@v3
with:
auto-update-conda: true
auto-activate-base: true
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19 changes: 8 additions & 11 deletions .github/workflows/test.yml
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Expand Up @@ -17,13 +17,12 @@ jobs:
with:
# for codecov
fetch-depth: 5
- uses: conda-incubator/setup-miniconda@v2
- uses: conda-incubator/setup-miniconda@v3
with:
activate-environment: ilastik-env
auto-activate-base: false
auto-update-conda: true
environment-file: .github/workflows/etc/ilastik-env.yaml
miniforge-variant: Mambaforge
miniforge-version: latest
use-mamba: true
- name: linux test
if: matrix.os == 'ubuntu-latest'
Expand All @@ -41,8 +40,8 @@ jobs:
if: matrix.os == 'windows-latest'
shell: cmd /C CALL {0}
# auto activation of env does not seem to work on win
run: |
pip install -e . & pytest
run: >-
pip install -e . && pytest
- uses: codecov/codecov-action@v3
if: matrix.os == 'ubuntu-latest'
with:
Expand All @@ -62,15 +61,13 @@ jobs:
runs-on: ${{ matrix.os }}
steps:
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v2
- uses: conda-incubator/setup-miniconda@v3
with:
activate-environment: ""
auto-activate-base: true
activate-environment: build-env
environment-file: .github/workflows/etc/build-env.yaml
auto-update-conda: true
miniforge-variant: Mambaforge
miniforge-version: latest
use-mamba: true
- name: install build deps
run: mamba install -n base -c conda-forge boa setuptools_scm -y
- name: linux conda build test
if: matrix.os == 'ubuntu-latest'
shell: bash -l {0}
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