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@interactivereport interactivereport released this 16 Oct 20:11
· 378 commits to master since this release
  • FIx a bug if rules of description line is not followed exactly

Add short description and initial graph settings. “|” and “by” are delimiters for VIP to parse the initial settings. Please follow the same rule for your own h5ad files. Please ensure to use matching names (umap, cell_type) in your data set.

adata.obs['>Description'] = ['Human brain snRNAseq 46k cells (MS Nature 2019 Schirmer et al.); data - normalized, log transformed and scaled UMI; platform - 10X v2 chemistry | embedding by umap; color by cell_type']*adata.n_obs