Merge pull request #20 from jangevaare/minimal

v0.10.0

.gitignore

@@ -3,3 +3,4 @@
 *.jl.mem
 .ipynb_checkpoints
 testfile.jl
+.DS_Store

Manifest.toml

@@ -1,102 +1,2 @@
 # This file is machine-generated - editing it directly is not advised
 
-[[Automa]]
-deps = ["DataStructures", "Printf", "Random", "Test", "TranscodingStreams"]
-git-tree-sha1 = "c81526bf5f6fb4616b4e22a3cd62ac20e255fd3c"
-uuid = "67c07d97-cdcb-5c2c-af73-a7f9c32a568b"
-version = "0.8.0"
-
-[[Base64]]
-uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
-
-[[BioSymbols]]
-deps = ["Automa", "Test"]
-git-tree-sha1 = "36bd8fc32e02b60dba123d5eecc7b4a90ef7d265"
-uuid = "3c28c6f8-a34d-59c4-9654-267d177fcfa9"
-version = "3.1.0"
-
-[[DataStructures]]
-deps = ["InteractiveUtils", "OrderedCollections"]
-git-tree-sha1 = "0809951a1774dc724da22d26e4289bbaab77809a"
-uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
-version = "0.17.0"
-
-[[Distributed]]
-deps = ["Random", "Serialization", "Sockets"]
-uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
-
-[[InteractiveUtils]]
-deps = ["Markdown"]
-uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
-
-[[Libdl]]
-uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
-
-[[LinearAlgebra]]
-deps = ["Libdl"]
-uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
-
-[[Logging]]
-uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
-
-[[Markdown]]
-deps = ["Base64"]
-uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
-
-[[OrderedCollections]]
-deps = ["Random", "Serialization", "Test"]
-git-tree-sha1 = "c4c13474d23c60d20a67b217f1d7f22a40edf8f1"
-uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
-version = "1.1.0"
-
-[[Printf]]
-deps = ["Unicode"]
-uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
-
-[[Random]]
-deps = ["Serialization"]
-uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
-
-[[RecipesBase]]
-git-tree-sha1 = "7bdce29bc9b2f5660a6e5e64d64d91ec941f6aa2"
-uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01"
-version = "0.7.0"
-
-[[Serialization]]
-uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
-
-[[Sockets]]
-uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
-
-[[SparseArrays]]
-deps = ["LinearAlgebra", "Random"]
-uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
-
-[[StaticArrays]]
-deps = ["LinearAlgebra", "Random", "Statistics"]
-git-tree-sha1 = "db23bbf50064c582b6f2b9b043c8e7e98ea8c0c6"
-uuid = "90137ffa-7385-5640-81b9-e52037218182"
-version = "0.11.0"
-
-[[Statistics]]
-deps = ["LinearAlgebra", "SparseArrays"]
-uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
-
-[[SubstitutionModels]]
-deps = ["BioSymbols", "LinearAlgebra", "StaticArrays"]
-git-tree-sha1 = "13860d3bc5538677d35dce2fa17046764c84ab5f"
-uuid = "8365b1bb-bd83-58ee-a267-f2965fc81c73"
-version = "0.4.0"
-
-[[Test]]
-deps = ["Distributed", "InteractiveUtils", "Logging", "Random"]
-uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
-
-[[TranscodingStreams]]
-deps = ["Random", "Test"]
-git-tree-sha1 = "7c53c35547de1c5b9d46a4797cf6d8253807108c"
-uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
-version = "0.9.5"
-
-[[Unicode]]
-uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"

Project.toml

@@ -1,11 +1,13 @@
 name = "PhyloTrees"
 uuid = "4c47b132-0681-5a5d-b498-3afcf53fd314"
 authors = ["justin <[email protected]>"]
-version = "0.9.0"
-
-[deps]
-RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01"
-SubstitutionModels = "8365b1bb-bd83-58ee-a267-f2965fc81c73"
+version = "0.10.0"
 
 [compat]
 julia = "≥ 1.0.0"
+
+[extras]
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+
+[targets]
+test = ["Test"]

src/PhyloTrees.jl

@@ -2,10 +2,6 @@ __precompile__()
 
 module PhyloTrees
 
-  # Dependencies
-  using
-    RecipesBase
-
   # Methods expanded
   import
     Base.show,
@@ -69,5 +65,4 @@ module PhyloTrees
   include("utilities.jl")
   include("distance.jl")
   include("traversal.jl")
-  include("plot.jl")
 end