[MNT] change refs from alan-turing-institute to sktime (sktime#2926)

* change refs to sktime

* linting

* more replacements

.all-contributorsrc

@@ -1798,7 +1798,7 @@
     },
   ],
   "projectName": "sktime",
-  "projectOwner": "alan-turing-institute",
+  "projectOwner": "sktime",
   "repoType": "github",
   "repoHost": "https://github.com",
   "commitConvention": "none"

.github/PULL_REQUEST_TEMPLATE.md

@@ -1,6 +1,6 @@
 <!--
 Thanks for contributing a pull request! Please ensure you have taken a look
-at our contribution guide: https://github.com/alan-turing-institute/sktime/blob/main/CONTRIBUTING.md
+at our contribution guide: https://github.com/sktime/sktime/blob/main/CONTRIBUTING.md
 -->
 
 #### Reference Issues/PRs
@@ -39,8 +39,8 @@ Please go through the checklist below. Please feel free to remove points if they
 -->
 
 ##### For all contributions
-- [ ] I've added myself to the [list of contributors](https://github.com/alan-turing-institute/sktime/blob/main/.all-contributorsrc).
-- [ ] Optionally, I've updated sktime's [CODEOWNERS](https://github.com/alan-turing-institute/sktime/blob/main/CODEOWNERS) to receive notifications about future changes to these files.
+- [ ] I've added myself to the [list of contributors](https://github.com/sktime/sktime/blob/main/.all-contributorsrc).
+- [ ] Optionally, I've updated sktime's [CODEOWNERS](https://github.com/sktime/sktime/blob/main/CODEOWNERS) to receive notifications about future changes to these files.
 - [ ] I've added unit tests and made sure they pass locally.
 - [ ] The PR title starts with either [ENH], [MNT], [DOC], or [BUG] indicating whether the PR topic is related to enhancement, maintenance, documentation, or bug.
 

README.md

@@ -1,4 +1,4 @@
-<a href="https://sktime.org"><img src="https://github.com/alan-turing-institute/sktime/blob/main/docs/source/images/sktime-logo.jpg?raw=true)" width="175" align="right" /></a>
+<a href="https://sktime.org"><img src="https://github.com/sktime/sktime/blob/main/docs/source/images/sktime-logo.jpg?raw=true)" width="175" align="right" /></a>
 
 # Welcome to sktime
 
@@ -12,8 +12,8 @@ sktime is a library for time series analysis in Python. It provides a unified in
 
 | Overview | |
 |---|---|
-| **CI/CD** | [![github-actions](https://img.shields.io/github/workflow/status/alan-turing-institute/sktime/build-and-test?logo=github)](https://github.com/alan-turing-institute/sktime/actions?query=workflow%3Abuild-and-test) [![!codecov](https://img.shields.io/codecov/c/github/alan-turing-institute/sktime?label=codecov&logo=codecov)](https://codecov.io/gh/alan-turing-institute/sktime) [![readthedocs](https://img.shields.io/readthedocs/sktime?logo=readthedocs)](https://www.sktime.org/en/latest/?badge=latest) [![platform](https://img.shields.io/conda/pn/conda-forge/sktime)](https://github.com/alan-turing-institute/sktime) |
-| **Code** |  [![!pypi](https://img.shields.io/pypi/v/sktime?color=orange)](https://pypi.org/project/sktime/) [![!conda](https://img.shields.io/conda/vn/conda-forge/sktime)](https://anaconda.org/conda-forge/sktime) [![!python-versions](https://img.shields.io/pypi/pyversions/sktime)](https://www.python.org/) [![!black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black) [![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/alan-turing-institute/sktime/main?filepath=examples) |
+| **CI/CD** | [![github-actions](https://img.shields.io/github/workflow/status/sktime/sktime/build-and-test?logo=github)](https://github.com/sktime/sktime/actions?query=workflow%3Abuild-and-test) [![!codecov](https://img.shields.io/codecov/c/github/sktime/sktime?label=codecov&logo=codecov)](https://codecov.io/gh/sktime/sktime) [![readthedocs](https://img.shields.io/readthedocs/sktime?logo=readthedocs)](https://www.sktime.org/en/latest/?badge=latest) [![platform](https://img.shields.io/conda/pn/conda-forge/sktime)](https://github.com/sktime/sktime) |
+| **Code** |  [![!pypi](https://img.shields.io/pypi/v/sktime?color=orange)](https://pypi.org/project/sktime/) [![!conda](https://img.shields.io/conda/vn/conda-forge/sktime)](https://anaconda.org/conda-forge/sktime) [![!python-versions](https://img.shields.io/pypi/pyversions/sktime)](https://www.python.org/) [![!black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black) [![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/sktime/sktime/main?filepath=examples) |
 | **Downloads**| [![Downloads](https://static.pepy.tech/personalized-badge/sktime?period=week&units=international_system&left_color=grey&right_color=blue&left_text=weekly%20(pypi))](https://pepy.tech/project/sktime) [![Downloads](https://static.pepy.tech/personalized-badge/sktime?period=month&units=international_system&left_color=grey&right_color=blue&left_text=monthly%20(pypi))](https://pepy.tech/project/sktime) [![Downloads](https://static.pepy.tech/personalized-badge/sktime?period=total&units=international_system&left_color=grey&right_color=blue&left_text=cumulative%20(pypi))](https://pepy.tech/project/sktime) |
 | **Community** | [![!slack](https://img.shields.io/static/v1?logo=slack&label=slack&message=chat&color=lightgreen)](https://join.slack.com/t/sktime-group/shared_invite/zt-1cghagwee-sqLJ~eHWGYgzWbqUX937ig) [![!discord](https://img.shields.io/static/v1?logo=discord&label=discord&message=chat&color=lightgreen)](https://discord.com/invite/gqSab2K) [![!slack](https://img.shields.io/static/v1?logo=linkedin&label=LinkedIn&message=news&color=lightblue)](https://www.linkedin.com/company/sktime/) [![!twitter](https://img.shields.io/static/v1?logo=twitter&label=Twitter&message=news&color=lightblue)](https://twitter.com/sktime_toolbox) [![!youtube](https://img.shields.io/static/v1?logo=youtube&label=YouTube&message=tutorials&color=red)](https://www.youtube.com/playlist?list=PLKs3UgGjlWHqNzu0LEOeLKvnjvvest2d0) |
 | **Citation** | [![!zenodo](https://zenodo.org/badge/DOI/10.5281/zenodo.3749000.svg)](https://doi.org/10.5281/zenodo.3749000) |
@@ -33,7 +33,7 @@ sktime is a library for time series analysis in Python. It provides a unified in
 | :pencil: **[Related Software]**          | A list of related software. |
 
 [tutorials]: https://www.sktime.org/en/latest/tutorials.html
-[binder notebooks]: https://mybinder.org/v2/gh/alan-turing-institute/sktime/main?filepath=examples
+[binder notebooks]: https://mybinder.org/v2/gh/sktime/sktime/main?filepath=examples
 [user guides]: https://www.sktime.org/en/latest/user_guide.html
 [video tutorial]: https://github.com/sktime/sktime-tutorial-pydata-global-2021
 [api reference]: https://www.sktime.org/en/latest/api_reference.html
@@ -54,8 +54,8 @@ Questions and feedback are extremely welcome! Please understand that we won't be
 | :factory: **Contribution & Development** | [Slack], contributors channel · [Discord] |
 | :globe_with_meridians: **Community collaboration session** | [Discord] - Fridays 1pm UTC, dev/meet-ups channel |
 
-[github issue tracker]: https://github.com/alan-turing-institute/sktime/issues
-[github discussions]: https://github.com/alan-turing-institute/sktime/discussions
+[github issue tracker]: https://github.com/sktime/sktime/issues
+[github discussions]: https://github.com/sktime/sktime/discussions
 [stack overflow]: https://stackoverflow.com/questions/tagged/sktime
 [discord]: https://discord.com/invite/gqSab2K
 [slack]: https://join.slack.com/t/sktime-group/shared_invite/zt-1cghagwee-sqLJ~eHWGYgzWbqUX937ig
@@ -74,21 +74,21 @@ For **deep learning**, see our companion package: [sktime-dl](https://github.com
 
 | Module | Status | Links |
 |---|---|---|
-| **[Forecasting]** | stable | [Tutorial](https://www.sktime.org/en/latest/examples/01_forecasting.html) · [API Reference](https://www.sktime.org/en/latest/api_reference.html#sktime-forecasting-time-series-forecasting) · [Extension Template](https://github.com/alan-turing-institute/sktime/blob/main/extension_templates/forecasting.py)  |
-| **[Time Series Classification]** | stable | [Tutorial](https://github.com/alan-turing-institute/sktime/blob/main/examples/02_classification.ipynb) · [API Reference](https://www.sktime.org/en/latest/api_reference.html#sktime-classification-time-series-classification) · [Extension Template](https://github.com/alan-turing-institute/sktime/blob/main/extension_templates/classification.py) |
+| **[Forecasting]** | stable | [Tutorial](https://www.sktime.org/en/latest/examples/01_forecasting.html) · [API Reference](https://www.sktime.org/en/latest/api_reference.html#sktime-forecasting-time-series-forecasting) · [Extension Template](https://github.com/sktime/sktime/blob/main/extension_templates/forecasting.py)  |
+| **[Time Series Classification]** | stable | [Tutorial](https://github.com/sktime/sktime/blob/main/examples/02_classification.ipynb) · [API Reference](https://www.sktime.org/en/latest/api_reference.html#sktime-classification-time-series-classification) · [Extension Template](https://github.com/sktime/sktime/blob/main/extension_templates/classification.py) |
 | **[Time Series Regression]** | stable | [API Reference](https://www.sktime.org/en/latest/api_reference.html#sktime-classification-time-series-regression) |
-| **[Transformations]** | stable | [API Reference](https://www.sktime.org/en/latest/api_reference.html#sktime-transformations-time-series-transformers) · [Extension Template](https://github.com/alan-turing-institute/sktime/blob/main/extension_templates/transformer.py)  |
-| **[Time Series Clustering]** | maturing | [Extension Template](https://github.com/alan-turing-institute/sktime/blob/main/extension_templates/clustering.py) |
-| **[Time Series Distances/Kernels]** | experimental | [Extension Template](https://github.com/alan-turing-institute/sktime/blob/main/extension_templates/dist_kern_panel.py) |
-| **[Annotation]** | experimental | [Extension Template](https://github.com/alan-turing-institute/sktime/blob/main/extension_templates/annotation.py) |
+| **[Transformations]** | stable | [API Reference](https://www.sktime.org/en/latest/api_reference.html#sktime-transformations-time-series-transformers) · [Extension Template](https://github.com/sktime/sktime/blob/main/extension_templates/transformer.py)  |
+| **[Time Series Clustering]** | maturing | [Extension Template](https://github.com/sktime/sktime/blob/main/extension_templates/clustering.py) |
+| **[Time Series Distances/Kernels]** | experimental | [Extension Template](https://github.com/sktime/sktime/blob/main/extension_templates/dist_kern_panel.py) |
+| **[Annotation]** | experimental | [Extension Template](https://github.com/sktime/sktime/blob/main/extension_templates/annotation.py) |
 
-[forecasting]: https://github.com/alan-turing-institute/sktime/tree/main/sktime/forecasting
-[time series classification]: https://github.com/alan-turing-institute/sktime/tree/main/sktime/classification
-[time series regression]: https://github.com/alan-turing-institute/sktime/tree/main/sktime/regression
-[time series clustering]: https://github.com/alan-turing-institute/sktime/tree/main/sktime/clustering
-[annotation]: https://github.com/alan-turing-institute/sktime/tree/main/sktime/annotation
-[time series distances/kernels]: https://github.com/alan-turing-institute/sktime/tree/main/sktime/dists_kernels
-[transformations]: https://github.com/alan-turing-institute/sktime/tree/main/sktime/transformations
+[forecasting]: https://github.com/sktime/sktime/tree/main/sktime/forecasting
+[time series classification]: https://github.com/sktime/sktime/tree/main/sktime/classification
+[time series regression]: https://github.com/sktime/sktime/tree/main/sktime/regression
+[time series clustering]: https://github.com/sktime/sktime/tree/main/sktime/clustering
+[annotation]: https://github.com/sktime/sktime/tree/main/sktime/annotation
+[time series distances/kernels]: https://github.com/sktime/sktime/tree/main/sktime/dists_kernels
+[transformations]: https://github.com/sktime/sktime/tree/main/sktime/transformations
 
 
 ## :hourglass_flowing_sand: Install sktime
@@ -183,9 +183,9 @@ There are many ways to join the sktime community. We follow the [all-contributor
 
 [contribute]: https://www.sktime.org/en/latest/get_involved/contributing.html
 [donate]: https://opencollective.com/sktime
-[extension templates]: https://github.com/alan-turing-institute/sktime/tree/main/extension_templates
+[extension templates]: https://github.com/sktime/sktime/tree/main/extension_templates
 [developer guides]: https://www.sktime.org/en/latest/developer_guide.html
-[contributors]: https://github.com/alan-turing-institute/sktime/blob/main/CONTRIBUTORS.md
+[contributors]: https://github.com/sktime/sktime/blob/main/CONTRIBUTORS.md
 [governance]: https://www.sktime.org/en/latest/governance.html
 [mentoring]: https://github.com/sktime/mentoring
 [meetings]: https://calendar.google.com/calendar/u/0/[email protected]&ctz=UTC

build_tools/changelog.py

@@ -15,7 +15,7 @@
 if os.getenv("GITHUB_TOKEN") is not None:
     HEADERS["Authorization"] = f"token {os.getenv('GITHUB_TOKEN')}"
 
-OWNER = "alan-turing-institute"
+OWNER = "sktime"
 REPO = "sktime"
 GITHUB_REPOS = "https://api.github.com/repos"
 

docs/source/about/_mission.rst

@@ -1,4 +1,4 @@
 sktime provides an easy-to-use, flexible and modular `open-source
-<https://github.com/alan-turing-institute/sktime/blob/main/LICENSE>`_ :term:`framework` for a wide range of time series machine learning tasks.
+<https://github.com/sktime/sktime/blob/main/LICENSE>`_ :term:`framework` for a wide range of time series machine learning tasks.
 It offers `scikit-learn <http://scikit-learn.org>`_ compatible interfaces and model composition tools, with the goal to make the ecosystem more usable and interoperable as a whole.
 We build and sustain an open, diverse and :ref:`self-governing <governance>` community, welcoming new contributors from academia and industry through instructive documentation, :ref:`mentoring <mentoring>` and :ref:`workshops <meetups>`.

docs/source/about/artwork.rst

@@ -4,7 +4,7 @@
 Artwork
 =======
 
-High-quality logos are available in the `docs/source/images/ <https://github.com/alan-turing-institute/sktime/tree/main/docs/source/images>`_ directory on GitHub.
+High-quality logos are available in the `docs/source/images/ <https://github.com/sktime/sktime/tree/main/docs/source/images>`_ directory on GitHub.
 
 The logos were designed by `Miguel Garcia Cabrera <https://www.flickr.com/photos/miguelgarciacabrera/>`_.
 

docs/source/about/citation.md

@@ -4,4 +4,4 @@ If you use sktime in a scientific publication, we would appreciate
 citations to the following papers:
 
 * [Markus Löning, Anthony Bagnall, Sajaysurya Ganesh, Viktor Kazakov, Jason Lines, Franz Király (2019): “sktime: A Unified Interface for Machine Learning with Time Series”](http://learningsys.org/neurips19/assets/papers/sktime_ml_systems_neurips2019.pdf)
-* [Markus Löning, Tony Bagnall, Sajaysurya Ganesh, George Oastler, Jason Lines, ViktorKaz, …, Aadesh Deshmukh (2020). alan-turing-institute/sktime. Zenodo. http://doi.org/10.5281/zenodo.3749000](http://doi.org/10.5281/zenodo.3749000)
+* [Markus Löning, Tony Bagnall, Sajaysurya Ganesh, George Oastler, Jason Lines, ViktorKaz, …, Aadesh Deshmukh (2020). sktime/sktime. Zenodo. http://doi.org/10.5281/zenodo.3749000](http://doi.org/10.5281/zenodo.3749000)

docs/source/changelog.rst

@@ -3,14 +3,14 @@
 Changelog
 =========
 
-All notable changes to this project will be documented in this file. We keep track of changes in this file since v0.4.0. The format is based on `Keep a Changelog <https://keepachangelog.com/en/1.0.0/>`_ and we adhere to `Semantic Versioning <https://semver.org/spec/v2.0.0.html>`_. The source code for all `releases <https://github.com/alan-turing-institute/sktime/releases>`_ is available on GitHub.
+All notable changes to this project will be documented in this file. We keep track of changes in this file since v0.4.0. The format is based on `Keep a Changelog <https://keepachangelog.com/en/1.0.0/>`_ and we adhere to `Semantic Versioning <https://semver.org/spec/v2.0.0.html>`_. The source code for all `releases <https://github.com/sktime/sktime/releases>`_ is available on GitHub.
 
 .. note::
 
     To stay up-to-date with sktime releases, subscribe to sktime `here
     <https://libraries.io/pypi/sktime>`_ or follow us on `Twitter <https://twitter.com/sktime_toolbox>`_.
 
-For upcoming changes and next releases, see our `milestones <https://github.com/alan-turing-institute/sktime/milestones?direction=asc&sort=due_date&state=open>`_.
+For upcoming changes and next releases, see our `milestones <https://github.com/sktime/sktime/milestones?direction=asc&sort=due_date&state=open>`_.
 For our long-term plan, see our :ref:`roadmap`.
 
 Version 0.13.3 - 2022-09-25
@@ -2532,7 +2532,7 @@ Contributors
 
 Full changelog
 ~~~~~~~~~~~~~~
-https://github.com/alan-turing-institute/sktime/compare/v0.8.1...v0.9.0
+https://github.com/sktime/sktime/compare/v0.8.1...v0.9.0
 
 
 [0.8.1] - 2021-10-28
@@ -2701,7 +2701,7 @@ BaseEstimator/BaseObject
 In-memory data types
 ^^^^^^^^^^^^^^^^^^^^
 
-* introduction of m(achine)types and scitypes for defining in-memory format conventions across all modules, see `in-memory data types tutorial <https://github.com/alan-turing-institute/sktime/blob/main/examples/AA_datatypes_and_datasets.ipynb>`_
+* introduction of m(achine)types and scitypes for defining in-memory format conventions across all modules, see `in-memory data types tutorial <https://github.com/sktime/sktime/blob/main/examples/AA_datatypes_and_datasets.ipynb>`_
 * loose conversion methods now in :code:`_convert` files in :code:`datatypes` will no longer be publicly accessible in 0.10.0
 
 Forecasting

docs/source/conf.py

@@ -123,7 +123,7 @@
 suppress_warnings = ["myst.mathjax"]
 
 # Link to GitHub repo for github_issues extension
-issues_github_path = "alan-turing-institute/sktime"
+issues_github_path = "sktime/sktime"
 
 
 def linkcode_resolve(domain, info):
@@ -159,7 +159,7 @@ def find_source():
         filename = "sktime/%s#L%d-L%d" % find_source()
     except Exception:
         filename = info["module"].replace(".", "/") + ".py"
-    return "https://github.com/alan-turing-institute/sktime/blob/%s/%s" % (
+    return "https://github.com/sktime/sktime/blob/%s/%s" % (
         CURRENT_VERSION,
         filename,
     )
@@ -180,7 +180,7 @@ def find_source():
     "icon_links": [
         {
             "name": "GitHub",
-            "url": "https://github.com/alan-turing-institute/sktime",
+            "url": "https://github.com/sktime/sktime",
             "icon": "fab fa-github",
         },
         {
@@ -219,7 +219,7 @@ def find_source():
 }
 html_logo = "images/sktime-logo-text-horizontal.png"
 html_context = {
-    "github_user": "alan-turing-institute",
+    "github_user": "sktime",
     "github_repo": "sktime",
     "github_version": "main",
     "doc_path": "docs/source/",
@@ -402,7 +402,7 @@ def adds(pth):
 current_file = "{{ env.doc2path( env.docname, base=None) }}"
 
 # make sure Binder points to latest stable release, not main
-binder_url = f"https://mybinder.org/v2/gh/alan-turing-institute/sktime/{CURRENT_VERSION}?filepath={current_file}"  # noqa
+binder_url = f"https://mybinder.org/v2/gh/sktime/sktime/{CURRENT_VERSION}?filepath={current_file}"  # noqa
 nbsphinx_prolog = f"""
 .. |binder| image:: https://mybinder.org/badge_logo.svg
 .. _Binder: {binder_url}
@@ -411,7 +411,9 @@ def adds(pth):
 """
 
 # add link to original notebook at the bottom
-notebook_url = f"https://github.com/alan-turing-institute/sktime/tree/{CURRENT_VERSION}/{current_file}"  # noqa
+notebook_url = (
+    f"https://github.com/sktime/sktime/tree/{CURRENT_VERSION}/{current_file}"  # noqa
+)
 nbsphinx_epilog = f"""
 ----
 

docs/source/contributing/reporting_bugs.rst

@@ -11,9 +11,9 @@ It is recommended to check that your issue complies with the following
 rules before submitting:
 
 -  Verify that your issue is not being currently addressed by other
-   `issues <https://github.com/alan-turing-institute/sktime/issues>`__
+   `issues <https://github.com/sktime/sktime/issues>`__
    or `pull
-   requests <https://github.com/alan-turing-institute/sktime/pulls>`__.
+   requests <https://github.com/sktime/sktime/pulls>`__.
 -  Please ensure all code snippets and error messages are formatted in
    appropriate code blocks. See `Creating and highlighting code
    blocks <https://help.github.com/articles/creating-and-highlighting-code-blocks>`__.