A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays.

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The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology

A light-weight, flexible, and expressive statistical data testing library

Tuplex is a parallel big data processing framework that runs data science pipelines written in Python at the speed of compiled code. Tuplex has similar Python APIs to Apache Spark or Dask, but rath…

High level plotting on the GPU.

Powerful convenience for Julia visualizations and data analysis

Fit generalized linear models in python.

The PYthoN General UnIt Test geNerator is a test-generation tool for Python

Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing

Unified biological sequence manipulation in Python

Deep probabilistic analysis of single-cell omics data

The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell level. CPA performs OOD predictions of unseen combinations of dr…

Repository to host tool-specific module files for the Nextflow DSL2 community!

MyVCF2: a web-based tool for the analysis and visualization of mutations stored in VCF files

Hypermodern Python Cookiecutter

Geometry-preserving random sampling

Panoramic stitching of single cell data

A collection of modern/faster/saner alternatives to common unix commands.

An interactive explorer for single-cell transcriptomics data

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