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Heatmaps
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klmr committed May 14, 2015
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Expand Up @@ -29,6 +29,19 @@ \chapter{Supplementary material for \texorpdfstring{\cref*{sec:trna}}{chapter 2}
occupancy at \trna gene loci, differential expression analysis of \trna
genes, and anticodon isoacceptor abundance analysis.}

\textfig{mrna-heatmap}{spill}{\textwidth}
{Hierarchical clustering of \mrna gene expression correlations.}
{The heatmap shows the Spearman correlations of \mrna gene expression values,
representing the same data as \cref{fig:mrna-pca}. The samples cluster
hierarchically by tissue, followed by developmental stage.}

\textfig{trna-heatmap}{spill}{\textwidth}
{Hierarchical clustering of \trna gene expression correlations.}
{The heatmap shows the Spearman correlations of \trna gene expression values,
representing the same data as \cref{fig:trna-pca}. The samples cluster
hierarchically by tissue, followed by developmental stage, with few
exceptions.}

\textfig{correlation-plots-rnaseq-pol3}{text}{0.7\textwidth}
{Correlation of \rnaseq and \pol3 \chipseq data during mouse liver and brain
development.}
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