Add tests

kostrykin · Mar 11, 2024 · 699e642 · 699e642
1 parent 047bcf4
commit 699e642
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Showing 4 changed files with 32 additions and 2 deletions.
diff --git a/tools/orientationpy/orientationpy-cli.py b/tools/orientationpy/orientationpy-cli.py
@@ -46,5 +46,5 @@
     if args.output_angle_tsv:
         with open(args.output_angle_tsv, 'w') as fp:
             writer = csv.writer(fp, delimiter='\t', lineterminator='\n')
-            writer.writerow('Degrees')
+            writer.writerow('Angle')
             writer.writerow(angle)
diff --git a/tools/orientationpy/orientationpy.xml b/tools/orientationpy/orientationpy.xml
@@ -45,9 +45,39 @@
         <data format="tsv" name="output_angle_tsv" from_work_dir="output_angle.tsv" />
     </outputs>
     <tests>
+        <test>
+            <param name="image" value="input1.tif" />
+            <param name="mode" value="finite_difference" />
+            <param name="sigma" value="2" />
+            <param name="min_energy" value="0.1" />
+            <param name="min_coherency" value="0.2" />
+            <output name="output_angle_tsv">
+                <assert_contents>
+                    <has_line line="Angle" />
+                    <has_line line="45" />
+                    <has_n_lines n="2" />
+                    <has_n_columns n="1" />
+                </assert_contents>
+            </output>
+        </test>
+        <test>
+            <param name="image" value="input2.tif" />
+            <param name="mode" value="finite_difference" />
+            <param name="sigma" value="2" />
+            <param name="min_energy" value="0.1" />
+            <param name="min_coherency" value="0.2" />
+            <output name="output_angle_tsv">
+                <assert_contents>
+                    <has_line line="Angle" />
+                    <has_line line="-45" />
+                    <has_n_lines n="2" />
+                    <has_n_columns n="1" />
+                </assert_contents>
+            </output>
+        </test>
     </tests>
     <help>
-        Compute image orientation based on OrientationPy.
+        Compute image orientation in degrees using OrientationPy.
 
         OrientationPy is the pythonic successor to the well-loved OrientationJ Fiji Plugin.
         It is a library that takes in 2D images or 3D volumes and computes the orientation of the greylevels.

diff --git a/tools/orientationpy/test-data/input1.tif b/tools/orientationpy/test-data/input1.tif
diff --git a/tools/orientationpy/test-data/input2.tif b/tools/orientationpy/test-data/input2.tif