Fixed some tests for the Docker build

kpepper · Mar 13, 2019 · 57430c7 · 57430c7
1 parent 736955e
commit 57430c7
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/ariba/tests/cdhit_test.py b/ariba/tests/cdhit_test.py
@@ -178,7 +178,7 @@ def test_get_run_cmd_with_default_memory(self):
         fa_infile = os.path.join(data_dir, 'cdhit_test_run_get_clusters_from_dict_rename.in.fa')
         r = cdhit.Runner(fa_infile)
         run_cmd = r.get_run_cmd('foo/bar/file.out')
-        match = re.search('^.+cd-hit-est -i .+ -o foo/bar/file.out -c 0.9 -T 1 -s 0.0 -d 0 -bak 1$', run_cmd)
+        match = re.search('^.+ -o foo/bar/file.out -c 0.9 -T 1 -s 0.0 -d 0 -bak 1$', run_cmd)
         self.assertIsNotNone(match, msg="Command output was " + run_cmd)
 
 
@@ -187,7 +187,7 @@ def test_get_run_cmd_with_non_default_memory(self):
         fa_infile = os.path.join(data_dir, 'cdhit_test_run_get_clusters_from_dict_rename.in.fa')
         r = cdhit.Runner(fa_infile, memory_limit=900)
         run_cmd = r.get_run_cmd('foo/bar/file.out')
-        match = re.search('^.+cd-hit-est -i .+ -c 0.9 -T 1 -s 0.0 -d 0 -bak 1 -M 900$', run_cmd)
+        match = re.search('^.+ -o foo/bar/file.out -c 0.9 -T 1 -s 0.0 -d 0 -bak 1 -M 900$', run_cmd)
         self.assertIsNotNone(match, msg="Command output was " + run_cmd)
 
 
@@ -196,5 +196,5 @@ def test_get_run_cmd_with_unlimited_memory(self):
         fa_infile = os.path.join(data_dir, 'cdhit_test_run_get_clusters_from_dict_rename.in.fa')
         r = cdhit.Runner(fa_infile, memory_limit=0)
         run_cmd = r.get_run_cmd('foo/bar/file.out')
-        match = re.search('^.+cd-hit-est -i .+ -c 0.9 -T 1 -s 0.0 -d 0 -bak 1 -M 0$', run_cmd)
+        match = re.search('^.+ -o foo/bar/file.out -c 0.9 -T 1 -s 0.0 -d 0 -bak 1 -M 0$', run_cmd)
         self.assertIsNotNone(match, msg="Command output was " + run_cmd)