E2E Test with train API

Fix Kustomize patchesStrategicMerge deprecation warning #171

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Run time

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Job	Run time
e2e-test (v1.31.4, 3.9)	13m 13s
e2e-test (v1.31.4, 3.10)	14m 1s
e2e-test (v1.31.4, 3.11)	13m 18s
	40m 32s