masking recombination in xmfa

[rndg20]

Hi

I've used your code to mask recombination regions in MSA, and it works really well (thank you!). However, I am currently working with a gene alignment which is in xmfa format. CFML has given me the coordinates of the recombination regions and I was wondering if there is a way to use your code to mask these regions in the xmfa?

[kwongj]

Yes it should be possible, I just haven't implemented it.
I will add it to a list of potential enhancements for the next version.