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✏️ Genome assembly polishing & SNV detection

C++ 66 9 Updated Feb 21, 2025

mtGrasp: de novo reference-grade mitochondrial genome assembly and standardization

Python 15 2 Updated Feb 10, 2025

Bioinformatics Technology Lab common code library

C++ 25 6 Updated Jan 27, 2025

🌳 Human ancestry inference from genomic data

Python 6 Updated Jan 20, 2025

De novo protein-coding potential calculator using a k-mer approach

Perl 4 Updated Dec 27, 2024

GoldPolish (aka GoldRush-Edit) is a long read sequence polisher used in the GoldRush assembler

C++ 5 Updated Oct 1, 2024

Linear-time de novo Long Read Assembler

C++ 38 2 Updated Jan 29, 2025

Program for automatically renaming rock core photographs using a custom implemented machine learning & deep learning pipeline.

Jupyter Notebook 2 Updated Oct 29, 2023

rAMPage: Rapid AMP Annotation and Gene Estimation

Shell 6 1 Updated May 21, 2024

Efficient targeted error resolution and automated finishing of long-read genome assemblies

Makefile 6 1 Updated Jun 26, 2024

🧬 Unique (& conserved) DNA sequence identification

Perl 11 1 Updated Nov 18, 2024

Extensive de-novo TE Annotator

Perl 362 76 Updated Feb 13, 2025

Conda recipes for the bioconda channel.

Shell 1,699 3,378 Updated Feb 26, 2025

:shipit: interactive visualization of single-cell transcriptomes

Java 11 4 Updated Dec 23, 2023

🍺🔬 Bioinformatics formulae for the Homebrew package manager (macOS and Linux)

Ruby 307 120 Updated Feb 25, 2025

Use cDNA alignments with or without genetic map information to evaluate the completeness and correctness of a de novo genome or transcriptome assembly.

Python 3 2 Updated Aug 29, 2019
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