BCSalmonDisease

This repo contains data and scripts for the BC Salmon Disease Review paper by...

Here is a quick rundown of how this repo is organized:

• Scripts needed to reproduce figures are found in the Scripts folder
• Data required to reproduce figures is found in the Data folder
• Outputs for figures are found in the Plots folder

The Scripts folder

• 1_Figure.R : Figure 1 script
• 2_Figure.R : Figure 2 script

To do...

• 3_Figure.R : Figure 3 script

The Data folder

• 1_BCSalmon.xlsx : DFO and FAO datasets for farmed atlantic salmon and commercially captured pacific salmon in British Columbia

• 2_GlobalAquaculture.csv : FAO dataset for farmed atlantic salmon produced globally

• 3_GlobalPacificCapture.csv : FAO dataset for commercially caught pacific salmon

• 4_GlobalAtlanticCapture.csv : FAO dataset for commercially caught atlantic salmon

• 5_SeaLiceCounts.csv : DFO Sea Lice Counts

• shapefiles : Contains shapefiles for Washington, Alaska, and BC salmon farms

To do....

• Figure 3 csv files for salmon plots

The Plots folder

To do....

• 1_Figure.tif : Depicts global and BC quantities for farmed and captured salmon over time

• 2_Figure

• 3_Figure