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1. Geneformer_Cell_Type_Annotation Geneformer_Cell_Type_Annotation Public

   A structured pipeline for fine tuning a foundation model (Geneformer) for the task of cell type classification using scRNAseq data

   Python

2. Multimodal_Integration_Internship Multimodal_Integration_Internship Public

   Examples of code created by me for the internship at Theis Lab. All the code is Theis Lab's property.

   Jupyter Notebook

3. Local_Sequence_Alignment_Tool Local_Sequence_Alignment_Tool Public

   Tool for exact local alignment of DNA sequences (string pairs) under a custom scoring system - Smith-Waterman Implementation

   Python

4. Gene_Expression_Neural_ODEs Gene_Expression_Neural_ODEs Public

   Simple modelling of scRNAseq time dependent gene distributions with neural ordinary differential equations

   Jupyter Notebook

5. Unsupervised_Domain_Adaptation Unsupervised_Domain_Adaptation Public

   Image classification using Alexnet (CNN) in the domain adaptation setting.

   Jupyter Notebook

6. Bioinformatics_with_R Bioinformatics_with_R Public

   A data analysis pipeline on renal papillary cell carcinoma RNA-seq data in R