Ontoportal align: Add groups and categories administration

app/assets/stylesheets/admin.scss

@@ -16,6 +16,7 @@
 .error {
   background: #ffecec image-url("error.png") no-repeat 10px 50%;
   border: 1px solid #f5aca6;
+  padding-left: 30px;
 }
 
 .success {
@@ -139,3 +140,8 @@ table.dataTable tbody tr.selected {
     margin-right: 8px;
   }
 }
+
+div.groupFormError {
+  color: red;
+  padding-top: 3px;
+}

app/controllers/admin/categories_controller.rb

@@ -0,0 +1,108 @@
+class Admin::CategoriesController < ApplicationController
+
+  layout :determine_layout
+  before_action :unescape_id, only: [:edit, :show, :update, :destroy]
+  before_action :authorize_admin
+
+  CATEGORIES_URL = "#{LinkedData::Client.settings.rest_url}/categories"
+
+  def index
+    response = _categories
+    render :json => response
+  end
+
+  def new
+    @category = LinkedData::Client::Models::Category.new
+
+    respond_to do |format|
+      format.html { render "new", :layout => false }
+    end
+  end
+
+  def edit
+    @category = LinkedData::Client::Models::Category.find_by_acronym(params[:id]).first
+
+    respond_to do |format|
+      format.html { render "edit", :layout => false }
+    end
+  end
+
+  def create
+    response = { errors: '', success: '' }
+    start = Time.now
+    begin
+      category = LinkedData::Client::Models::Category.new(values: category_params)
+      category_saved = category.save
+      if response_error?(category_saved)
+        response[:errors] = response_errors(category_saved)
+      else
+        response[:success] = "category successfully created in  #{Time.now - start}s"
+      end
+    rescue Exception => e
+      response[:errors] = "Problem creating the category  - #{e.message}"
+    end
+    render json: response, status: (response[:errors] == '' ? :created : :internal_server_error)
+
+  end
+
+  def update
+    response = { errors: '', success: ''}
+    start = Time.now
+    begin
+      category = LinkedData::Client::Models::Category.find_by_acronym(params[:id]).first
+      category.update_from_params(category_params)
+      category_update = category.update
+
+      if response_error?(category_update)
+        response[:errors] = response_errors(category_update)
+      else
+        response[:success] = "category successfully updated in  #{Time.now - start}s"
+      end
+    rescue Exception => e
+      response[:errors] = "Problem updating the category - #{e.message}"
+    end
+    render json: response, status: (response[:errors] == '' ? :ok : :internal_server_error)
+  end
+
+  def destroy
+    response = { errors: '', success: ''}
+    start = Time.now
+    begin
+      category = LinkedData::Client::Models::Category.find_by_acronym(params[:id]).first
+      error_response = category.delete
+
+      if response_error?(error_response)
+        response[:errors] = response_errors(error_response)
+      else
+        response[:success] = "category successfully deleted in  #{Time.now - start}s"
+      end
+    rescue Exception => e
+      response[:errors] = "Problem deleting the category - #{e.message}"
+    end
+    render json: response, status: (response[:errors] == '' ? :ok : :internal_server_error)
+  end
+
+  private
+
+  def unescape_id
+    params[:id] = CGI.unescape(params[:id])
+  end
+
+  def category_params
+    params.require(:category).permit(:acronym, :name, :description, :parentCategory).to_h
+  end
+
+  def _categories
+    response = { categories: Hash.new, errors: '', success: '' }
+    start = Time.now
+    begin
+      response[:categories] = JSON.parse(LinkedData::Client::HTTP.get(CATEGORIES_URL, { include: 'all' }, raw: true))
+
+      response[:success] = "categories successfully retrieved in  #{Time.now - start}s"
+      LOG.add :debug, "Categories - retrieved #{response[:categories].length} groups in #{Time.now - start}s"
+    rescue Exception => e
+      response[:errors] = "Problem retrieving categories  - #{e.message}"
+    end
+    response
+  end
+end

app/controllers/admin/groups_controller.rb

@@ -0,0 +1,107 @@
+class Admin::GroupsController < ApplicationController
+
+  layout :determine_layout
+  before_action :unescape_id, only: [:edit, :show, :update, :destroy]
+  before_action :authorize_admin
+
+  GROUPS_URL = "#{LinkedData::Client.settings.rest_url}/groups"
+
+  def index
+    response = _groups
+    render :json => response
+  end
+
+  def new
+    @group = LinkedData::Client::Models::Group.new
+
+    respond_to do |format|
+      format.html { render "new", :layout => false }
+    end
+  end
+
+  def edit
+    @group = LinkedData::Client::Models::Group.find_by_acronym(params[:id]).first
+
+    respond_to do |format|
+      format.html { render "edit", :layout => false }
+    end
+  end
+
+  def create
+    response = { errors: '', success: '' }
+    start = Time.now
+    begin
+      group = LinkedData::Client::Models::Group.new(values: group_params)
+      group_saved = group.save
+      if response_error?(group_saved)
+        response[:errors] = response_errors(group_saved)
+      else
+        response[:success] = "group successfully created in  #{Time.now - start}s"
+      end
+    rescue Exception => e
+      response[:errors] = "Problem creating the group  - #{e.message}"
+    end
+    render json: response, status: (response[:errors] == '' ? :created : :internal_server_error)
+
+  end
+
+  def update
+    response = { errors: '', success: ''}
+    start = Time.now
+    begin
+      group = LinkedData::Client::Models::Group.find_by_acronym(params[:id]).first
+      group.update_from_params(group_params)
+      group_updated = group.update
+      if response_error?(group_updated)
+        response[:errors] = response_errors(group_updated)
+      else
+        response[:success] = "group successfully updated in  #{Time.now - start}s"
+      end
+    rescue Exception => e
+      response[:errors] = "Problem updating the group - #{e.message}"
+    end
+    render json: response, status: (response[:errors] == '' ? :ok : :internal_server_error)
+  end
+
+  def destroy
+    response = { errors: '', success: ''}
+    start = Time.now
+    begin
+      group = LinkedData::Client::Models::Group.find_by_acronym(params[:id]).first
+      error_response = group.delete
+
+      if response_error?(error_response)
+        response[:errors] = response_errors(error_response)
+      else
+        response[:success] = "group successfully deleted in  #{Time.now - start}s"
+      end
+    rescue Exception => e
+      response[:errors] = "Problem deleting the group - #{e.message}"
+    end
+    render json: response, status: (response[:errors] == '' ? :ok : :internal_server_error)
+  end
+
+  private
+
+  def unescape_id
+    params[:id] = CGI.unescape(params[:id])
+  end
+
+  def group_params
+    params.require(:group).permit(:acronym, :name, :description).to_h()
+  end
+
+  def _groups
+    response = { groups: Hash.new, errors: '', success: '' }
+    start = Time.now
+    begin
+      response[:groups] = JSON.parse(LinkedData::Client::HTTP.get(GROUPS_URL, { include: 'all' }, raw: true))
+
+      response[:success] = "groups successfully retrieved in  #{Time.now - start}s"
+      LOG.add :debug, "Groups - retrieved #{response[:groups].length} groups in #{Time.now - start}s"
+    rescue Exception => e
+      response[:errors] = "Problem retrieving groups  - #{e.message}"
+    end
+    response
+  end
+end

app/views/admin/categories/_form.html.haml

@@ -0,0 +1,43 @@
+- new_record = @category.acronym.nil?
+%div.alert-box.error{style: @errors.nil? ?  "display: none" : nil }
+  %ul
+    - unless @errors.nil?
+      - for error in @errors
+        %li
+          = error
+%div{:style => "width:500px"}
+  %span.asterik{:style => "float:right;"} * fields are required
+  %h3 #{title_text}
+  %table#category_form.form
+    %colgroup
+      %col
+      %col{style: "width: 100%"}
+    %tr
+      %th
+        Acronym:
+        %span.asterik *
+      %td.top
+        - if new_record
+          = f.text_field :acronym, class: "form-control"
+        - else
+          = f.text_field :acronym, class: "form-control", readonly: true
+    %tr
+      %th
+        Name:
+        %span.asterik *
+      %td.top
+        = f.text_field :name, class: "form-control"
+    %tr
+      %th
+        Description:
+      %td.top
+        = f.text_area :description, class: "form-control"
+    - unless new_record
+      %tr
+        %th
+          Created:
+        %td.top
+          = f.text_field :created, readonly: true, class: "form-control"
+  %div.mt-2
+    = f.submit button_text, class: "btn btn-primary mr-sm-2 group-form-accept"
+    = link_to "Cancel", "javascript:;", class: "btn btn-primary dismiss-dialog"

app/views/admin/categories/edit.html.haml

@@ -0,0 +1,6 @@
+- @title = "Edit category"
+
+%div
+  = form_for :category, url: admin_categories_path + "/" + escape(@category.acronym), method: "PATCH", remote: true, data: { collection: "categories"}, html: {class: "admin-collection-form" } do |f|
+    = render partial: "form", locals: {f: f, title_text: "Edit category",
+                                             button_text: "Edit category", button_class: "edit-category"}

app/views/admin/categories/new.html.haml

@@ -0,0 +1,6 @@
+- @title = "Create new category"
+
+%div
+  = form_for :category, url: admin_categories_path, method: "POST", remote: true, data: { collection: "categories"}, html: {class: "admin-collection-form" } do |f|
+    = render partial: "form", locals: {f: f, title_text: "Create category",
+                                             button_text: "Create category" }

app/views/admin/groups/_form.html.haml

@@ -0,0 +1,43 @@
+- new_record = @group.acronym.nil?
+%div.alert-box.error{style: @errors.nil? ?  "display: none" : nil }
+  %ul
+    - unless @errors.nil?
+      - for error in @errors
+        %li
+          = error
+%div{:style => "width:500px"}
+  %span.asterik{:style => "float:right;"} * fields are required
+  %h3 #{title_text}
+  %table#group_form.form
+    %colgroup
+      %col
+      %col{style: "width: 100%"}
+    %tr
+      %th
+        Acronym:
+        %span.asterik *
+      %td.top
+        - if new_record
+          = f.text_field :acronym, class: "form-control"
+        - else
+          = f.text_field :acronym, class: "form-control", readonly: true
+    %tr
+      %th
+        Name:
+        %span.asterik *
+      %td.top
+        = f.text_field :name, class: "form-control"
+    %tr
+      %th
+        Description:
+      %td.top
+        = f.text_area :description, class: "form-control"
+    - unless new_record
+      %tr
+        %th
+          Created:
+        %td.top
+          = f.text_field :created, readonly: true, class: "form-control"
+  %div.mt-2
+    = f.submit button_text, class: "btn btn-primary mr-sm-2 group-form-accept"
+    = link_to "Cancel", "javascript:;", class: "btn btn-primary dismiss-dialog"

app/views/admin/groups/edit.html.haml

@@ -0,0 +1,6 @@
+- @title = "Edit group"
+
+%div
+  = form_for :group, url: admin_groups_path + "/" + escape(@group.acronym), method: "PATCH", remote: true, data: { collection: "groups"}, html: {class: "admin-collection-form" } do |f|
+    = render partial: "form", locals: {f: f, title_text: "Edit group",
+                                             button_text: "Edit group", button_class: "edit-group"}

app/views/admin/groups/new.html.haml

@@ -0,0 +1,6 @@
+- @title = "Create new group"
+
+%div
+  = form_for :group, url: admin_groups_path, method: "POST", remote: true, data: { collection: "groups"}, html: {class: "admin-collection-form" } do |f|
+    = render partial: "form", locals: {f: f, title_text: "Create group",
+                                             button_text: "Create group" }

app/views/admin/index.html.haml

@@ -1,4 +1,4 @@
-- @title = "BioPortal Administration"
+- @title = "Administration"
 
 %div.row
   %div.col
@@ -25,6 +25,10 @@
         =link_to("Users", "#users", id: "users-admin-tab", class: "nav-link", role: "tab", data: { toggle: "tab", href: users_path() }, aria: { controls: "users", selected: "false" })
       %li.nav-item
         =link_to("Metadata Administration", "#ontologies_metadata_curator", id: "ontologies_metadata_curator-admin-tab", class: "nav-link", role: "tab", data: { toggle: "tab"}, aria: { controls: "ontologies_metadata_curator", selected: "false" })   
+      %li.nav-item
+        =link_to("Groups", "#groups", id: "groups-admin-tab", class: "nav-link", role: "tab", data: { toggle: "tab", href: "groups" }, aria: { controls: "groups", selected: "false" })
+      %li.nav-item
+        =link_to("Categories", "#categories", id: "categories-admin-tab", class: "nav-link", role: "tab", data: { toggle: "tab", href: "categories" }, aria: { controls: "categories", selected: "false" })
     %div#adminTabContent.tab-content
 
       -# Site Administration tab
@@ -95,6 +99,17 @@
       %div.tab-pane.fade{id: "ontologies_metadata_curator", role: "tabpanel", aria: { labelledby: "ontologies_metadata_curator-admin-tab" }}
         = render partial: 'ontologies_metadata_curator/metadata_tab'
 
+      -# Groups tab
+      %div.tab-pane.fade{id: "groups", role: "tabpanel", aria: { labelledby: "groups-admin-tab" }}
+        %div.ontologies_list_container.mt-3
+          %table#adminGroups.zebra{:cellpadding => "0", :cellspacing => "0", :width => "100%"}
+
+      -# Categories tab
+      %div.tab-pane.fade{id: "categories", role: "tabpanel", aria: { labelledby: "categories-admin-tab" }}
+        %div.ontologies_list_container.mt-3
+          %table#adminCategories.zebra{:cellpadding => "0", :cellspacing => "0", :width => "100%"}
+
+
 
 
 

config/routes.rb

@@ -50,6 +50,8 @@
 
   namespace :admin do
     resources :licenses, only: [:index, :create, :new]
+    resources :groups, only: [:index, :create, :new, :edit, :update, :destroy]
+    resources :categories, only: [:index, :create, :new, :edit, :update, :destroy]
   end
 
   resources :subscriptions