Add long and lat mapping

loculus-project · Sep 16, 2024 · c8f8530 · c8f8530
1 parent 92eec06
commit c8f8530
Show file tree

Hide file tree

Showing 3 changed files with 8 additions and 0 deletions.
diff --git a/ena-submission/README.md b/ena-submission/README.md
@@ -39,6 +39,8 @@ In a loop:
 
 #### create_sample
 
+Maps loculus metadata to ena metadata using template: https://www.ebi.ac.uk/ena/browser/view/ERC000033
+
 In a loop
 
 - Get sequences in `submission_table` in state SUBMITTED_PROJECT

diff --git a/ena-submission/config/defaults.yaml b/ena-submission/config/defaults.yaml
@@ -54,3 +54,7 @@ metadata_mapping:
     loculus_fields: [environmentalSite, environmentalMaterial]
   'authors':
     loculus_fields: [authors]
+  'geographic location (latitude)':
+    loculus_fields: [geoLocLatitude]
+  'geographic location (longitude)':
+    loculus_fields: [geoLocLongitude]
diff --git a/ena-submission/test/approved_ena_submission_list_test.json b/ena-submission/test/approved_ena_submission_list_test.json
@@ -38,6 +38,8 @@
             "anatomicalPart": null,
             "geoLocAdmin1": null,
             "geoLocAdmin2": null,
+            "geoLocLatitude": null,
+            "geoLocLongitude": null,
             "geoLocCountry": "Pakistan",
             "insdcVersion_L": null,
             "insdcVersion_M": null,