Merge branch 'master' into Stefano_Development

loganoz · Oct 19, 2023 · 1aa56f9 · 1aa56f9
2 parents e0e6ead + 5e71c14
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diff --git a/.github/workflows/CI_parallel.yml b/.github/workflows/CI_parallel.yml
diff --git a/.github/workflows/CI_sequential 1.yml b/.github/workflows/CI_sequential 1.yml
@@ -0,0 +1,365 @@
+# This is a basic workflow to help you get started with Actions
+
+name: CI SEQ COMP+EULER
+
+########################################################################
+# Controls when the action will run.
+on:
+  # Triggers the workflow on push or pull request events but only for the master branch
+  push:
+    branches: [ master ]
+  pull_request:
+    branches: [ master ]
+
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+#env:
+#  HDF5_ROOT : /usr/lib/x86_64-linux-gnu/hdf5/serial/
+# A workflow run is made up of one or more jobs that can run sequentially or in parallel
+jobs:
+  # This workflow contains a single job called "build"
+  build:
+    # The type of runner that the job will run on
+    runs-on: ubuntu-latest
+
+    # Define strategy matrix
+    strategy:
+      fail-fast: false
+      matrix:
+        compiler: ['gfortran', 'ifort']
+        mode: ['RELEASE', 'DEBUG']
+        comm: ['SEQUENTIAL']
+        enable_threads: ['YES']
+        mkl: ['YES','NO']
+        exclude:
+        - compiler: gfortran
+          mode: RELEASE
+          comm: SEQUENTIAL
+          enable_threads: YES
+          mkl: 'YES'
+        - compiler: gfortran
+          mode: DEBUG
+          comm: SEQUENTIAL
+          enable_threads: YES
+          mkl: 'YES'          
+        - compiler: ifort
+          mode: RELEASE
+          comm: SEQUENTIAL
+          enable_threads: YES
+          mkl: 'NO'
+        - compiler: ifort
+          mode: DEBUG
+          comm: SEQUENTIAL
+          enable_threads: YES
+          mkl: 'NO'          
+    # Steps represent a sequence of tasks that will be executed as part of the job
+
+    steps:
+      # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
+      - uses: actions/checkout@v3
+
+      # sudo apt-get install -qq pkg-config libhdf5-serial-dev
+#      - name: Install Linux packages
+#        run: |
+#          sudo apt-get update
+#          sudo apt install libhdf5-dev
+#          dpkg -L libhdf5-dev
+
+      # IF COMPILER = IFORT -> INSTALL IFORT #
+      - name: cache-intel-compilers
+        # if: (matrix.compiler == 'ifort')
+        id: cache-intel-compilers
+        uses: actions/cache@v3
+        with:
+          path: /opt/intel
+          key: intel-${{ runner.os }}-compilers-b
+
+      - name: Intel Apt repository
+        if: (steps.cache-intel-compilers.outputs.cache-hit != 'true')
+        run: |
+          wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS-2023.PUB
+          sudo apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS-2023.PUB
+          rm GPG-PUB-KEY-INTEL-SW-PRODUCTS-2023.PUB
+          echo "deb https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list
+          sudo apt-get update
+
+      - name: Install Intel oneAPI
+        if: (steps.cache-intel-compilers.outputs.cache-hit != 'true')
+        run: sudo apt-get install intel-oneapi-compiler-fortran intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic intel-oneapi-mpi intel-oneapi-mpi-devel intel-oneapi-mkl ninja-build
+      # Runs a single command using the runners shell
+      ##- name: Install gfortran
+      ##  run: |
+      ##   sudo add-apt-repository ppa:ubuntu-toolchain-r/test
+      ##   sudo apt update
+      ##   sudo apt-get install gfortran-9
+
+      ##- name: Show gfortran version
+      ##  run: gfortran-9 --version
+
+      - name: Show ${{matrix.compiler}} version
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          printenv >> $GITHUB_ENV
+          ${{matrix.compiler}} --version
+
+      - name: Configure
+        working-directory: ./Solver
+        run: ./configure
+
+      - name: Compile horses3d
+        working-directory: ./Solver
+        run: |
+         source /opt/intel/oneapi/setvars.sh || true
+         make allclean MODE=${{matrix.mode}} COMPILER=${{matrix.compiler}} COMM=${{matrix.comm}} ENABLE_THREADS=${{matrix.enable_threads}} WITH_MKL=${{matrix.mkl}}
+         make MODE=${{matrix.mode}} COMPILER=${{matrix.compiler}} COMM=${{matrix.comm}} ENABLE_THREADS=${{matrix.enable_threads}} WITH_MKL=${{matrix.mkl}}
+
+########################################################################
+#######                         COMPONENTS                      ########
+########################################################################
+#
+# 1) FACE PATCHES TEST
+# --------------------
+
+      - name: Build FacePatches
+        working-directory: ./Solver/test/Components/FacePatches
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          make MODE=${{matrix.mode}} COMPILER=${{matrix.compiler}} COMM=${{matrix.comm}} ENABLE_THREADS=${{matrix.enable_threads}} WITH_MKL=${{matrix.mkl}}
+        if: '!cancelled()'
+
+      - name: Run FacePatches
+        working-directory: ./Solver/test/Components/FacePatches
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          ./bin/FacePatches
+        if: '!cancelled()'
+
+#
+# 2) GRADIENTS TEST
+# -----------------
+    # This test has been inactive in Alderaan for quite a long time
+#
+# 3) HEXMAPPINGS TEST
+# -------------------
+
+      - name: Build HexMappings
+        working-directory: ./Solver/test/Components/HexMappings
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          make MODE=${{matrix.mode}} COMPILER=${{matrix.compiler}} COMM=${{matrix.comm}} ENABLE_THREADS=${{matrix.enable_threads}} WITH_MKL=${{matrix.mkl}}
+        if: '!cancelled()'
+
+      - name: Run HexMappings
+        working-directory: ./Solver/test/Components/HexMappings
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          ./bin/HexMappings
+        if: '!cancelled()'
+
+#
+# 4) HEXMESH TEST
+# ---------------
+
+      - name: Build HexMesh
+        working-directory: ./Solver/test/Components/HexMesh
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          make MODE=${{matrix.mode}} COMPILER=${{matrix.compiler}} COMM=${{matrix.comm}} ENABLE_THREADS=${{matrix.enable_threads}} WITH_MKL=${{matrix.mkl}}
+        if: '!cancelled()'
+
+      - name: Run HexMesh
+        working-directory: ./Solver/test/Components/HexMesh
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          ./bin/HexMesh
+        if: '!cancelled()'
+
+#
+# 5) MESHCONSISTENCY TEST
+# -----------------------
+
+      - name: Build MeshConsistency
+        working-directory: ./Solver/test/Components/MeshConsistency
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          make MODE=${{matrix.mode}} COMPILER=${{matrix.compiler}} COMM=${{matrix.comm}} ENABLE_THREADS=${{matrix.enable_threads}} WITH_MKL=${{matrix.mkl}}
+        if: '!cancelled()'
+
+      - name: Run MeshConsistency
+        working-directory: ./Solver/test/Components/MeshConsistency
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          ./bin/MeshConsistency
+        if: '!cancelled()'
+
+#
+# 6) NODALSTORAGE TEST
+# --------------------
+
+      - name: Build NodalStorage
+        working-directory: ./Solver/test/Components/NodalStorage
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          make MODE=${{matrix.mode}} COMPILER=${{matrix.compiler}} COMM=${{matrix.comm}} ENABLE_THREADS=${{matrix.enable_threads}} WITH_MKL=${{matrix.mkl}}
+        if: '!cancelled()'
+
+      - name: Run NodalStorage
+        working-directory: ./Solver/test/Components/NodalStorage
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          ./bin/NodalStorage
+        if: '!cancelled()'
+
+########################################################################
+#######                         EULER                           ########
+########################################################################
+#
+# 1) DIFFUSER
+# -----------
+
+      - name: Build Diffuser
+        working-directory: ./Solver/test/Euler/Diffuser/SETUP
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          make MODE=${{matrix.mode}} COMPILER=${{matrix.compiler}} COMM=${{matrix.comm}} ENABLE_THREADS=${{matrix.enable_threads}} WITH_MKL=${{matrix.mkl}}
+        if: '!cancelled()'
+
+      - name: Run Diffuser
+        working-directory: ./Solver/test/Euler/Diffuser
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          ./horses3d.ns DiffuserFlow.control
+        if: '!cancelled()'
+
+#
+# 2) UNIFORM FLOW
+# ---------------
+
+      - name: Build UniformFlow
+        working-directory: ./Solver/test/Euler/UniformFlow/SETUP
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          make MODE=${{matrix.mode}} COMPILER=${{matrix.compiler}} COMM=${{matrix.comm}} ENABLE_THREADS=${{matrix.enable_threads}} WITH_MKL=${{matrix.mkl}}
+        if: '!cancelled()'
+
+      - name: Run UniformFlow
+        working-directory: ./Solver/test/Euler/UniformFlow
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          ./horses3d.ns UniformFlow.control
+        if: '!cancelled()'
+
+#
+# 3) BOX AROUND CIRCLE
+# --------------------
+
+      - name: Build BoxAroundCircle
+        working-directory: ./Solver/test/Euler/BoxAroundCircle/SETUP
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          make MODE=${{matrix.mode}} COMPILER=${{matrix.compiler}} COMM=${{matrix.comm}} ENABLE_THREADS=${{matrix.enable_threads}} WITH_MKL=${{matrix.mkl}}
+        if: '!cancelled()'
+
+      - name: Run BoxAroundCircle
+        working-directory: ./Solver/test/Euler/BoxAroundCircle
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          ./horses3d.ns BoxAroundCircle.control
+        if: '!cancelled()'
+
+#
+# 4) BOX AROUND CIRCLE PIROZZOLI
+# ------------------------------
+
+      - name: Build BoxAroundCirclePirozzoli
+        working-directory: ./Solver/test/Euler/BoxAroundCirclePirozzoli/SETUP
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          make MODE=${{matrix.mode}} COMPILER=${{matrix.compiler}} COMM=${{matrix.comm}} ENABLE_THREADS=${{matrix.enable_threads}} WITH_MKL=${{matrix.mkl}}
+        if: '!cancelled()'
+
+      - name: Run BoxAroundCirclePirozzoli
+        working-directory: ./Solver/test/Euler/BoxAroundCirclePirozzoli
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          ./horses3d.ns BoxAroundCirclePirozzoli.control
+        if: '!cancelled()'
+
+#
+# 5) Inviscid TGV with KEPEC
+# --------------------------
+
+      - name: Build TaylorGreenKEPEC
+        working-directory: ./Solver/test/Euler/TaylorGreenKEPEC/SETUP
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          make MODE=${{matrix.mode}} COMPILER=${{matrix.compiler}} COMM=${{matrix.comm}} ENABLE_THREADS=${{matrix.enable_threads}} WITH_MKL=${{matrix.mkl}}
+        if: '!cancelled()'
+
+      - name: Run TaylorGreenKEPEC
+        working-directory: ./Solver/test/Euler/TaylorGreenKEPEC
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          ./horses3d.ns TaylorGreenKEPEC.control
+        if: '!cancelled()'
+
+#
+# 6) Vortex transport 2D with KEPEC
+# ---------------------------------
+
+# Outdated test case. 
+#
+#      - name: Build VortexTransport2DKEPEC
+#        working-directory: ./Solver/test/Euler/VortexTransport2D/SETUP
+#        run: |
+#          source /opt/intel/oneapi/setvars.sh || true
+#          make MODE=${{matrix.mode}} COMPILER=${{matrix.compiler}} COMM=${{matrix.comm}} ENABLE_THREADS=${{matrix.enable_threads}} WITH_MKL=${{matrix.mkl}}
+#
+#      - name: Run VortexTransport2DKEPEC
+#        working-directory: ./Solver/test/Euler/VortexTransport2D
+#        run: |
+#          source /opt/intel/oneapi/setvars.sh || true
+#          ./horses3d.ns VortexTransport2D.control
+
+#
+# 7) Jacobian-Free Newton-Krylov
+# ------------------------------
+
+      # Deactivated because a mismatch in the accuracy.
+      # Double Precision equality failed:
+      #  Final maximum residual
+      #  Expected [1.6257217794191102E-011], Got [3.4106051316484809E-013]
+
+      - name: Build JFNK Uniform Flow
+        working-directory: ./Solver/test/Euler/JFNK/SETUP
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          make MODE=${{matrix.mode}} COMPILER=${{matrix.compiler}} COMM=${{matrix.comm}} ENABLE_THREADS=${{matrix.enable_threads}} WITH_MKL=${{matrix.mkl}}
+        if: '!cancelled()'
+
+      - name: Run JFNK Uniform Flow
+        working-directory: ./Solver/test/Euler/JFNK
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          ./horses3d.ns UniformFlowJFNK.control
+        if: '!cancelled()'
+
+#
+# 8) BOX AROUND CIRCLE WITH ADAPTATION
+# ------------------------------------
+
+      - name: Build BoxAroundCircle_pAdapted
+        working-directory: ./Solver/test/Euler/BoxAroundCircle_pAdapted/SETUP
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          make MODE=${{matrix.mode}} COMPILER=${{matrix.compiler}} COMM=${{matrix.comm}} ENABLE_THREADS=${{matrix.enable_threads}} WITH_MKL=${{matrix.mkl}}
+        if: '!cancelled()'
+
+      - name: Run BoxAroundCircle_pAdapted
+        working-directory: ./Solver/test/Euler/BoxAroundCircle_pAdapted
+        run: |
+          source /opt/intel/oneapi/setvars.sh || true
+          ./horses3d.ns BoxAroundCircle_pAdapted.control
+        if: '!cancelled()'
+