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use a larger k #41

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use a larger k #41

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2 changes: 1 addition & 1 deletion src/basic/kmer.h
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Original file line number Diff line number Diff line change
Expand Up @@ -197,7 +197,7 @@ class Kmer
{ return kMaxSize; }


static const uint32_t kNumUint64 = 4;
static const uint32_t kNumUint64 = 10;
static const uint32_t kBitsForSize = ((kNumUint64 <= 2) ? 6 : ((kNumUint64 <= 8) ? 8 : 16));
static const uint32_t kBitsForKmer = (kNumUint64 * 64 - kBitsForSize);
static const uint32_t kMaxSize = kBitsForKmer / 2;
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2 changes: 1 addition & 1 deletion src/sequence/short_sequence.h
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Expand Up @@ -99,7 +99,7 @@ class ShortSequence
return size() < seq.size();
}

static const uint32_t kMaxShortSequence = 128;
static const uint32_t kMaxShortSequence = 600;
static const uint32_t kNumBytes = (kMaxShortSequence + 3) / 4 + 2;

private:
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