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@mahmoodlab

Mahmood Lab @ Harvard/MGB

AI for Pathology Image Analysis Lab @ HMS / BWH

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  1. CLAM CLAM Public

    Open source tools for computational pathology - Nature BME

    Python 1.2k 378

  2. UNI UNI Public

    Towards a general-purpose foundation model for computational pathology - Nature Medicine

    Jupyter Notebook 386 56

  3. CONCH CONCH Public

    A vision-language foundation model for computational pathology - Nature Medicine

    Python 305 23

  4. TITAN TITAN Public

    Multimodal Whole Slide Foundation Model for Pathology

    Jupyter Notebook 149 18

  5. HIPT HIPT Public

    Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)

    Jupyter Notebook 531 93

  6. HEST HEST Public

    HEST: Bringing Spatial Transcriptomics and Histopathology together - NeurIPS 2024 (Spotlight)

    Python 211 19

Repositories

Showing 10 of 32 repositories
  • Trident Public
    mahmoodlab/Trident’s past year of commit activity
    0 0 0 0 Updated Jan 29, 2025
  • Patho-Bench Public
    mahmoodlab/Patho-Bench’s past year of commit activity
    0 0 0 0 Updated Jan 29, 2025
  • TriPath Public

    Analysis of 3D pathology samples using weakly supervised AI - Cell

    mahmoodlab/TriPath’s past year of commit activity
    Python 94 8 0 0 Updated Jan 24, 2025
  • PANTHER Public

    Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024

    mahmoodlab/PANTHER’s past year of commit activity
    Jupyter Notebook 108 11 0 0 Updated Jan 20, 2025
  • CONCH Public

    A vision-language foundation model for computational pathology - Nature Medicine

    mahmoodlab/CONCH’s past year of commit activity
    Python 305 23 5 1 Updated Jan 15, 2025
  • UNI Public

    Towards a general-purpose foundation model for computational pathology - Nature Medicine

    mahmoodlab/UNI’s past year of commit activity
    Jupyter Notebook 386 56 17 2 Updated Jan 15, 2025
  • TITAN Public

    Multimodal Whole Slide Foundation Model for Pathology

    mahmoodlab/TITAN’s past year of commit activity
    Jupyter Notebook 149 18 0 1 Updated Dec 20, 2024
  • HEST Public

    HEST: Bringing Spatial Transcriptomics and Histopathology together - NeurIPS 2024 (Spotlight)

    mahmoodlab/HEST’s past year of commit activity
    Python 211 19 6 0 Updated Dec 14, 2024
  • CLAM Public

    Open source tools for computational pathology - Nature BME

    mahmoodlab/CLAM’s past year of commit activity
    Python 1,190 GPL-3.0 378 18 7 Updated Dec 6, 2024
  • SurvPath Public

    Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024

    mahmoodlab/SurvPath’s past year of commit activity
    Python 124 6 7 0 Updated Nov 19, 2024

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