Adding QC checks for example SSSOM files (#268)

* Add qc for example mappings

* Update project.Makefile

* Update project.Makefile

.github/workflows/qc.yml

@@ -0,0 +1,31 @@
+# Basic ODK workflow
+
+name: CI
+
+# Controls when the action will run. 
+on:
+  # Triggers the workflow on push or pull request events but only for the master branch
+  push:
+    branches: [ master ]
+  pull_request:
+    branches: [ master ]
+
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+# A workflow run is made up of one or more jobs that can run sequentially or in parallel
+jobs:
+  sssom_validation:
+    runs-on: ubuntu-latest
+    container: obolibrary/odkfull:v1.4
+    steps:
+      - name: Install latest SSSOM
+        env:
+          DEFAULT_BRANCH: master
+        run: pip install --upgrade pip && pip install -U sssom 
+      - uses: actions/checkout@v2
+      - name: Run Mapping QC checks
+        env:
+          DEFAULT_BRANCH: master
+        run: make validate_mappings
+

examples/embedded/foodie-inc-2022-05-01.sssom.tsv

@@ -1,3 +1,10 @@
+# curie_map:
+#   FOODON: http://purl.obolibrary.org/obo/FOODON_
+#   KF_FOOD: https://kewl-foodie.inc/food/
+#   skos: http://www.w3.org/2004/02/skos/core#
+#   sssom: https://w3id.org/sssom/
+#   orcid: https://orcid.org/
+#   wikidata: https://www.wikidata.org/wiki/
 # mapping_set_id: https://w3id.org/sssom/tutorial/example1.sssom.tsv
 # license: https://creativecommons.org/licenses/by/4.0/
 # mapping_date: '2022-05-02'
@@ -10,15 +17,9 @@
 # subject_source: KF_FOOD:DB
 # comment: We could map to FOODON:00004187 instead which more specifically refers to
 #   'raw' Pink apples. Decided against to be consistent with other mapping choices.
-# curie_map:
-#   FOODON: http://purl.obolibrary.org/obo/FOODON_
-#   KF_FOOD: https://kewl-foodie.inc/food/
-#   skos: http://www.w3.org/2004/02/skos/core#
-#   sssom: https://w3id.org/sssom/
 subject_id	subject_label	predicate_id	object_id	object_label	mapping_justification	author_id	object_source_version	mapping_date	confidence	comment
 KF_FOOD:F001	apple	skos:exactMatch	FOODON:00002473	apple (whole)	semapv:ManualMappingCuration	orcid:0000-0002-7356-1779	http://purl.obolibrary.org/obo/foodon/releases/2022-02-01/foodon.owl	2022-05-02	0.95	"We could map to FOODON:03310788 instead to cover sliced apples, but only ""whole"" apple types exist."
 KF_FOOD:F002	gala	skos:exactMatch	FOODON:00003348	Gala apple (whole)	semapv:ManualMappingCuration	orcid:0000-0002-7356-1779	http://purl.obolibrary.org/obo/foodon/releases/2022-02-01/foodon.owl	2022-05-02	1.0	
 KF_FOOD:F003	pink	skos:exactMatch	FOODON:00004187	Pink apple (whole, raw)	semapv:ManualMappingCuration	orcid:0000-0002-7356-1779	http://purl.obolibrary.org/obo/foodon/releases/2022-02-01/foodon.owl	2022-05-02	0.9	"We could map to FOODON:00004187 instead which more specifically refers to ""raw"" Pink apples. Decided against to be consistent with other mapping choices."
 KF_FOOD:F004	braeburn	skos:exactMatch	sssom:NoMapping		semapv:ManualMappingCuration	orcid:0000-0002-7356-1779	http://purl.obolibrary.org/obo/foodon/releases/2022-02-01/foodon.owl	2022-05-02	1.0	
 KF_FOOD:F004	braeburn	skos:broadMatch	FOODON:00002473	apple (whole)	semapv:ManualMappingCuration	orcid:0000-0002-7356-1779	http://purl.obolibrary.org/obo/foodon/releases/2022-02-01/foodon.owl	2022-05-02	1.0	
-