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Breaking change: Replacing match_type with mapping_justification #154

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merged 5 commits into from
Apr 15, 2022
Merged

Breaking change: Replacing match_type with mapping_justification #154

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581be4a
Replacing `match_type` with `mapping_justification`
matentzn Apr 11, 2022
ec8b26b
Update sssom.yaml
matentzn Apr 11, 2022
89b24aa
Update sssom.yaml
matentzn Apr 14, 2022
2a977ee
Merge branch 'master' into issue150mappingjustification
matentzn Apr 14, 2022
ff4e8b7
Update sssom.yaml
matentzn Apr 14, 2022
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27 changes: 8 additions & 19 deletions model/schema/sssom.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -57,14 +57,6 @@ enums:
"1:0": One-to-none mapping
"0:1": None-to-one mapping
"n:n": Many-to-many mapping
match_type_enum:
permissible_values:
Lexical: Lexical match
Logical: Logical match
HumanCurated: Match based on human expert opinion
Complex: Match based on a variety of different strategies
Unspecified: Unknown match type
SemanticSimilarity: Match based on close semantic similarity
preprocessing_method_enum:
permissible_values:
Stemming:
Expand Down Expand Up @@ -189,21 +181,18 @@ slots:
description: (The CURIE of the Uberon term for "anatomical entity".)
- value: biolink:Gene
description: (The CURIE of the biolink class for genes.)
match_type:
description: The kind of match that led to the mapping, e.g. Logical or Lexical.
range: match_type_enum
mapping_justification:
description: A mapping justification is an action (or the written representation of that action) of showing a mapping to be right or reasonable.
range: EntityReference
required: true
examples:
- value: OMAPV:Lexical
- value: OMAPV:HumanCurated
object_type:
description: The type of entity that is being mapped.
range: entity_type_enum
examples:
- value: owl:Class
required: true
multivalued: true
examples:
- value: Lexical
description: (The type of match that led to the mapping is Lexical, i.e. based on comparing the string representation of an aspect of the subject with the string representation of an aspect of the subject.)
- value: HumanCurated
description: (The type of match that led to the mapping was by human expert judgement.)
mapping_set_id:
description: A globally unique identifier for the mapping set (not each individual
mapping). Should be IRI, ideally resolvable.
Expand Down Expand Up @@ -459,7 +448,7 @@ classes:
- object_id
- object_label
- object_category
- match_type
- mapping_justification
- author_id
- author_label
- reviewer_id
Expand Down