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+18a73d1b

index.html

@@ -305,6 +305,42 @@ <h1 class="title">MBON Data Report(s)</h1>
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 </div>
 </div>
+<div class="cell">
+<details class="code-fold">
+<summary>show counts for standard publication metrics</summary>
+<div class="sourceCode cell-code" id="cb5"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb5-1"><a href="#cb5-1" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(ggplot2)</span>
+<span id="cb5-2"><a href="#cb5-2" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(dplyr)</span>
+<span id="cb5-3"><a href="#cb5-3" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(tidyr)</span>
+<span id="cb5-4"><a href="#cb5-4" aria-hidden="true" tabindex="-1"></a></span>
+<span id="cb5-5"><a href="#cb5-5" aria-hidden="true" tabindex="-1"></a><span class="fu">source</span>(<span class="fu">here</span>(<span class="st">"R/getCleanedData.R"</span>))</span>
+<span id="cb5-6"><a href="#cb5-6" aria-hidden="true" tabindex="-1"></a>data <span class="ot">&lt;-</span> <span class="fu">getCleanedData</span>()</span>
+<span id="cb5-7"><a href="#cb5-7" aria-hidden="true" tabindex="-1"></a></span>
+<span id="cb5-8"><a href="#cb5-8" aria-hidden="true" tabindex="-1"></a><span class="co"># Select columns to analyze</span></span>
+<span id="cb5-9"><a href="#cb5-9" aria-hidden="true" tabindex="-1"></a>columns_to_check <span class="ot">&lt;-</span> <span class="fu">c</span>(</span>
+<span id="cb5-10"><a href="#cb5-10" aria-hidden="true" tabindex="-1"></a>  <span class="st">"erddap_link"</span>, <span class="st">"ncei_link"</span>, <span class="st">"code_link"</span>, <span class="st">"obis_link"</span>, <span class="st">"doi"</span>, <span class="st">"web_link"</span></span>
+<span id="cb5-11"><a href="#cb5-11" aria-hidden="true" tabindex="-1"></a>)</span>
+<span id="cb5-12"><a href="#cb5-12" aria-hidden="true" tabindex="-1"></a></span>
+<span id="cb5-13"><a href="#cb5-13" aria-hidden="true" tabindex="-1"></a><span class="co"># Count non-empty values for each column</span></span>
+<span id="cb5-14"><a href="#cb5-14" aria-hidden="true" tabindex="-1"></a>summary_df <span class="ot">&lt;-</span> data <span class="sc">%&gt;%</span></span>
+<span id="cb5-15"><a href="#cb5-15" aria-hidden="true" tabindex="-1"></a>  <span class="fu">summarise</span>(<span class="fu">across</span>(<span class="fu">all_of</span>(columns_to_check), <span class="sc">~</span> <span class="fu">sum</span>(<span class="sc">!</span><span class="fu">is.na</span>(.) <span class="sc">&amp;</span> . <span class="sc">!=</span> <span class="st">""</span>))) <span class="sc">%&gt;%</span></span>
+<span id="cb5-16"><a href="#cb5-16" aria-hidden="true" tabindex="-1"></a>  <span class="fu">pivot_longer</span>(<span class="at">cols =</span> <span class="fu">everything</span>(), <span class="at">names_to =</span> <span class="st">"Column"</span>, <span class="at">values_to =</span> <span class="st">"NonEmptyCount"</span>)</span>
+<span id="cb5-17"><a href="#cb5-17" aria-hidden="true" tabindex="-1"></a></span>
+<span id="cb5-18"><a href="#cb5-18" aria-hidden="true" tabindex="-1"></a><span class="co"># Plot the bar chart</span></span>
+<span id="cb5-19"><a href="#cb5-19" aria-hidden="true" tabindex="-1"></a><span class="fu">ggplot</span>(summary_df, <span class="fu">aes</span>(<span class="at">x =</span> Column, <span class="at">y =</span> NonEmptyCount)) <span class="sc">+</span></span>
+<span id="cb5-20"><a href="#cb5-20" aria-hidden="true" tabindex="-1"></a>  <span class="fu">geom_bar</span>(<span class="at">stat =</span> <span class="st">"identity"</span>, <span class="at">fill =</span> <span class="st">"steelblue"</span>) <span class="sc">+</span></span>
+<span id="cb5-21"><a href="#cb5-21" aria-hidden="true" tabindex="-1"></a>  <span class="fu">labs</span>(<span class="at">title =</span> <span class="st">"N Datasets Published by Repository"</span>,</span>
+<span id="cb5-22"><a href="#cb5-22" aria-hidden="true" tabindex="-1"></a>       <span class="at">x =</span> <span class="st">"Publication Type"</span>,</span>
+<span id="cb5-23"><a href="#cb5-23" aria-hidden="true" tabindex="-1"></a>       <span class="at">y =</span> <span class="st">"Number of Datasets"</span>) <span class="sc">+</span></span>
+<span id="cb5-24"><a href="#cb5-24" aria-hidden="true" tabindex="-1"></a>  <span class="fu">theme_minimal</span>()</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+</details>
+<div class="cell-output-display">
+<div>
+<figure class="figure">
+<p><img src="index_files/figure-html/unnamed-chunk-5-1.png" class="img-fluid figure-img" width="672"></p>
+</figure>
+</div>
+</div>
+</div>
 
 
 

regional_report/regional_reports.html

@@ -208,7 +208,7 @@ <h1 class="title">Project Reports</h1>
 
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+<div class="g-col-1" data-index="0" data-listing-file-modified-sort="1736374132923" data-listing-reading-time-sort="8" data-listing-word-count-sort="1440">
 <a href="../regional_report/regional_reports/All - this is a global dataset.html" class="quarto-grid-link">
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@@ -239,7 +239,7 @@ <h5 class="no-anchor card-title listing-title">
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+<div class="g-col-1" data-index="1" data-listing-file-modified-sort="1736374132926" data-listing-reading-time-sort="8" data-listing-word-count-sort="1440">
 <a href="../regional_report/regional_reports/Arctic.html" class="quarto-grid-link">
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@@ -270,7 +270,7 @@ <h5 class="no-anchor card-title listing-title">
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-<div class="g-col-1" data-index="2" data-listing-file-modified-sort="1726162772683" data-listing-reading-time-sort="8" data-listing-word-count-sort="1440">
+<div class="g-col-1" data-index="2" data-listing-file-modified-sort="1736374132928" data-listing-reading-time-sort="8" data-listing-word-count-sort="1440">
 <a href="../regional_report/regional_reports/Central California.html" class="quarto-grid-link">
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-<div class="g-col-1" data-index="3" data-listing-file-modified-sort="1726162772689" data-listing-reading-time-sort="8" data-listing-word-count-sort="1440">
+<div class="g-col-1" data-index="3" data-listing-file-modified-sort="1736374132965" data-listing-reading-time-sort="8" data-listing-word-count-sort="1440">
 <a href="../regional_report/regional_reports/Coastal New England.html" class="quarto-grid-link">
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-<div class="g-col-1" data-index="4" data-listing-file-modified-sort="1726162772693" data-listing-reading-time-sort="8" data-listing-word-count-sort="1440">
+<div class="g-col-1" data-index="4" data-listing-file-modified-sort="1736374132967" data-listing-reading-time-sort="8" data-listing-word-count-sort="1440">
 <a href="../regional_report/regional_reports/GLOS MBON.html" class="quarto-grid-link">
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+<div class="g-col-1" data-index="5" data-listing-file-modified-sort="1736374132970" data-listing-reading-time-sort="8" data-listing-word-count-sort="1440">
 <a href="../regional_report/regional_reports/Gulf of Maine.html" class="quarto-grid-link">
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+<div class="g-col-1" data-index="6" data-listing-file-modified-sort="1736374132972" data-listing-reading-time-sort="8" data-listing-word-count-sort="1440">
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+<div class="g-col-1" data-index="7" data-listing-file-modified-sort="1736374132975" data-listing-reading-time-sort="8" data-listing-word-count-sort="1440">
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