switch from old docker to new renv #27

marinebon · Aug 27, 2021 · ab95284 · ab95284
1 parent 30354c1
commit ab95284
Showing 1 changed file with 28 additions and 3 deletions.
diff --git a/.github/workflows/make_pages_on_push.yml b/.github/workflows/make_pages_on_push.yml
@@ -12,20 +12,45 @@ on:
 
 jobs:    
   build:
-    runs-on: ubuntu-latest
+        runs-on: macOS-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     if: "!contains(github.event.head_commit.message, 'ci skip')"
-    container: bdbest/cinms:1.0 # docker image
+    #container: bdbest/cinms:1.0 # docker image
     steps:
+
       - name: clone repo
         # get a shallow copy (depth 1) so only getting the latest version of files, not whole history
         run: git clone --depth 1 https://github.com/${{ github.repository }}.git .; ls
+
+      - name: Setup R
+        uses: r-lib/actions/setup-r@v1
+
+      - name: Install pandoc
+        run: |
+          brew install pandoc
+          
+      - name: Cache Renv packages
+        uses: actions/cache@v2
+        with:
+          path: $HOME/.local/share/renv
+          key: r-${{ hashFiles('renv.lock') }}
+          restore-keys: r- 
+
+      - name: Install packages
+        run: |
+          R -e 'install.packages("renv")'
+          R -e 'renv::restore()'
+          
       - name: make_pages
-        run: Rscript scripts/make_pages.R
+        run: Rscript scripts/make_pages.R > scripts/output_render.log
         # DEBUG: output to log, otherwise prevent unnecessary commit if files unchanged (b/c temp file always diff't)        
         #run: Rscript scripts/make_pages.R > scripts/output_render.log
+
       - name: if failure
         if: failure()
         run: tail -n40 scripts/output_render.log
+
       - name: commit changes
         run: |
           git config --local user.email "41898282+github-actions[bot]@users.noreply.github.com"