v2.0.2

• Fix R-M Type III definition

v2.0.1

• Fix bug for version with metadata
• 111 new systems (see Release_update.tsv)
• 15 modified systems (AbiK, AbiP2, BREX, CARD_NLR, DRT, Druantia, Gao_Mza, Hachiman, Lamassu-Fam, RM, Rst_RT-nitrilase-Tm, SanaTA, Thoeris, Zorya, see Release_update.tsv for more info)
• split multiple profile into single one (to fix issue mdmparis/defense-finder#68)
• Merge multiple DefenseFinder models (=directories) into a single one : Prevent proteins to be hit by different systems.

/ ! \ This is a breaking change with defense-finder software. These models require defense-finder version >= 2 to run.

v2.0.0+breakingchanges.updatedf.v2

• 111 new systems (see Release_update.tsv)
• 15 modified systems (AbiK, AbiP2, BREX, CARD_NLR, DRT, Druantia, Gao_Mza, Hachiman, Lamassu-Fam, RM, Rst_RT-nitrilase-Tm, SanaTA, Thoeris, Zorya, see Release_update.tsv for more info)
• split multiple profile into single one (to fix issue mdmparis/defense-finder#68)
• Merge multiple DefenseFinder models (=directories) into a single one : Prevent proteins to be hit by different systems.

/ ! \ This is a breaking change with defense-finder software. These models require defense-finder version >= 2 to run.

v1.3.0

Adding all AntiDefenseFinder definitions and profiles

v1.2.4

Minor release to fix some typo and hmm names. Fix issues #11 #12 #15

Also, we removed the profile CARD_NLR__Subtilase_long_new which was identical to the CARD_NLR__Subtilase_small_new one, because of a bug when building the profile. We will rebuild this profile in the next release.

v1.2.3

Adding new defense systems.
Modification of some names.
Better detection of systems

1.2.2

Change name for the Dynamins_like system to Eleos Greek goddess of composion. Modification of few GA cut

1.2.1

Modification of Lamassu-Fam profiles GA cut
Modification of Lamassu-Fam definition intergene space

1.2.0

Changing name of HMM file with this model : System/Subsystem__Protein name
Adding 51 new systems
Changing GA cut for Aditi and Mokosh_TypeI_A/B
Adding DefenseFinder rules files
Removing oudated definition and unused profiles

1.1.0

Add new systems from Adi Millman's 2022 article. Modification of PrrC and RM Type I definitions to increase detection. Modification of HMM name inside HMM files.