only index layout if it is bgzipped

mdrasmus · Mar 23, 2014 · d05cf29 · d05cf29
1 parent d659df7
commit d05cf29
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/bin/arg-layout b/bin/arg-layout
@@ -42,4 +42,5 @@ smc_files = args[1:]
 with argweaver.open_stream(layout_file, 'w', compress='bgzip') as out:
     for smc_file in smc_files:
         layout_arg(smc_file, out)
-argweaver.vis.index_arg_layout(layout_file)
+if layout_file.endswith('.gz'):
+    argweaver.vis.index_arg_layout(layout_file)