ZZOLD 2016 Compile R on raijin

http://pj.freefaculty.org/blog/?p=315

It looks like we can run RStudio even within a batch job: https://rpubs.com/garthtarr/35444

module load gcc/5.2.0 

cd ~/src
 wget http://zlib.net/zlib-1.2.8.tar.gz
 tar xzvf zlib-1.2.8.tar.gz
 cd zlib-1.2.8
 ./configure --prefix=$HOME/packages
make
make install

cd ~/src
wget http://www.bzip.org/1.0.6/bzip2-1.0.6.tar.gz
tar xzvf bzip2-1.0.6.tar.gz
cd bzip2-1.0.6

make -f Makefile-libbz2_so
 make clean
 make
 make -n install PREFIX=$HOME/packages
 make install PREFIX=$HOME/packages

cd ~/src
wget http://tukaani.org/xz/xz-5.2.2.tar.gz
tar xzvf xz-5.2.2.tar.gz
cd xz-5.2.2
./configure --prefix=$HOME/packages
make -j3
make install

cd ~/src

 wget ftp://ftp.csx.cam.ac.uk/pub/software/programming/pcre/pcre-8.38.tar.gz

 tar xzvf pcre-8.38.tar.gz
cd pcre-8.38
./configure --enable-utf8 --prefix=$HOME/packages

 make -j3
 make install

cd ~/src
 wget --no-check-certificate https://curl.haxx.se/download/curl-7.47.1.tar.gz
 tar xzvf curl-7.47.1.tar.gz
 cd curl-7.47.1

 ./configure --prefix=$HOME/packages
 make -j3
 make install

export PATH=$HOME/packages/bin:$PATH
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$LD_LIBRARY_PATH
export CFLAGS="-I$HOME/packages/include"
export LDFLAGS="-L$HOME/packages/lib"

cd R-3.3.0
./configure --prefix=$HOME/packages/