Merge branch 'master' into master

microbiome · Dec 5, 2023 · c54d4fa · c54d4fa
2 parents ee3dc3b + 51449d6
commit c54d4fa
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/vignettes/miaViz.Rmd b/vignettes/miaViz.Rmd
@@ -73,8 +73,8 @@ plotAbundance(GlobalPatterns, rank = "Kingdom", assay.type = "relabundance")
 With subsetting to selected features the plot can be fine tuned.
 
 ```{r}
-prev_phylum <- getPrevalentFeatures(GlobalPatterns, rank = "Phylum",
-                                detection = 0.01)
+prev_phylum <- getPrevalentTaxa(GlobalPatterns, rank = "Phylum",
+                                detection = 0.01, onRankOnly = TRUE)
 ```
 
 ```{r}