Add handling for multiple kegg ids to one molecule

microbiomedata · Feb 11, 2025 · a4f4102 · a4f4102
1 parent 73d8365
commit a4f4102
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/metaMS/nmdc_lipidomics_metadata_generation/metadata_generator.py b/metaMS/nmdc_lipidomics_metadata_generation/metadata_generator.py
@@ -1437,7 +1437,9 @@ def generate_metab_identifications(
             # Prepare KEGG Compound ID as an alternative identifier
             alt_ids = []
             if not pd.isna(best_hit["Kegg Compound ID"]):
-                alt_ids.append("kegg:" + best_hit["Kegg Compound ID"])
+                kegg_ids = best_hit["Kegg Compound ID"].split(" | ")
+                for kegg_id in kegg_ids:
+                    alt_ids.append("kegg:" + kegg_id)
             alt_ids = list(set(alt_ids))
 
             data_dict = {