resolution of nmdc-prefixed schema element, JSON data objects and DataPortal pages

[turbomam]

possible duplicate issue

• list resolvers
  • bioregistry
  • w3id via .htaccess
  • identifiers.org/miriam
• list endpoints/destinations
  • nmdc-schema documentation pages on GH pages
  • DataPortal representations of selected Class' instances, like Study and Biosample
  • nmdc-runtime document id endpoint

[turbomam]

prefer not to use DRS for getting objects (multiple steps?)

[turbomam]

nmdc.yaml says

  nmdc: https://w3id.org/nmdc/

• working schema element resolution via w3id.org:
  • nmdc:Biosample --schema prefixes--> https://w3id.org/nmdc/Biosample --w3id.org--> https://microbiomedata.github.io/nmdc-schema/Biosample/
• working endpoint for a data object in JSON:
  • https://api.microbiomedata.org/nmdcschema/ids/nmdc:sty-11-28tm5d36
• working endpoint for a data object via the DataPortal:
  • https://data.microbiomedata.org/details/study/nmdc:sty-11-28tm5d36

[turbomam]

see also

• Request to change of URL Pattern for nmdc prefix? identifiers-org/identifiers-org.github.io#233

[turbomam]

https://api-dev.microbiomedata.org/docs#/objects/get_object_info_objects__object_id__get

/objects/{object_id}

Resolution strategy:

if object_id.startswith("sty"): # nmdc:Study typecode then try https://data.microbiomedata.org/details/study/nmdc:{object_id}
if object_id.startswith("bsm"): # nmdc:Biosample typecode then try https://data.microbiomedata.org/details/sample/nmdc:{object_id}
if object_id.startswith some known typecode then try https://api.microbiomedata.org/nmdcschema/ids/nmdc:{object_id}
try https://w3id.org/nmdc/{object_id}
try mdb.objects.find_one({"id": object_id})

[dwinston]

related: microbiomedata/nmdc-server#1058

[dwinston]

this should be close-able once microbiomedata/nmdc-runtime#405 is merged and released.

[sujaypatil96]

Related issue:

• https://w3id.org/nmdc/nmdc doesn't resolve to https://microbiomedata.github.io/nmdc-schema/ #1611