updated to ubuntu 14.04, use runit

Dockerfile

@@ -1,19 +1,21 @@
-FROM ubuntu
+FROM ubuntu:14.04
 
-RUN echo 'deb http://archive.ubuntu.com/ubuntu precise main universe' > /etc/apt/sources.list && \
-    echo 'deb http://archive.ubuntu.com/ubuntu precise-updates universe' >> /etc/apt/sources.list && \
-    apt-get update
+ENV DEBIAN_FRONTEND noninteractive
+RUN apt-get update
 
-#Supervisord
-RUN DEBIAN_FRONTEND=noninteractive apt-get install -y supervisor && mkdir -p /var/log/supervisor
-CMD ["/usr/bin/supervisord", "-n"]
+#Runit
+RUN apt-get install -y runit 
+CMD /usr/sbin/runsvdir-start
 
 #SSHD
-RUN DEBIAN_FRONTEND=noninteractive apt-get install -y openssh-server &&	mkdir /var/run/sshd && \
-	echo 'root:root' |chpasswd
+RUN apt-get install -y openssh-server && \
+    mkdir -p /var/run/sshd && \
+    echo 'root:root' |chpasswd
+RUN sed -i "s/session.*required.*pam_loginuid.so/#session    required     pam_loginuid.so/" /etc/pam.d/sshd
+RUN sed -i "s/PermitRootLogin without-password/#PermitRootLogin without-password/" /etc/ssh/sshd_config
 
 #Utilities
-RUN DEBIAN_FRONTEND=noninteractive apt-get install -y vim less net-tools inetutils-ping curl git telnet nmap socat dnsutils netcat
+RUN apt-get install -y vim less net-tools inetutils-ping curl git telnet nmap socat dnsutils netcat tree htop unzip sudo software-properties-common
 
 #Required by Python packages
 RUN DEBIAN_FRONTEND=noninteractive apt-get install -y build-essential python-dev python-pip liblapack-dev libatlas-dev gfortran libfreetype6 libfreetype6-dev libpng12-dev python-lxml libyaml-dev g++ libffi-dev
@@ -30,30 +32,42 @@ RUN cd /tmp && \
 #Upgrade pip
 RUN pip install -U setuptools
 RUN pip install -U pip
+
 #matplotlib needs latest distribute
 RUN pip install -U distribute
+
 #IPython
 RUN pip install ipython
 ENV IPYTHONDIR /ipython
 RUN mkdir /ipython && \
     ipython profile create nbserver
+
 #NumPy v1.7.1 is required for Numba
 RUN pip install numpy==1.7.1
+
 #Pandas
 RUN pip install pandas
+
 #Optional
 RUN pip install cython
 RUN pip install jinja2 pyzmq tornado
-RUN pip install numexpr bottleneck scipy pygments matplotlib sympy pymc
+RUN pip install numexpr bottleneck scipy pygments 
+RUN apt-get install pkg-config
+RUN pip install matplotlib
+RUN pip install sympy pymc
 RUN pip install patsy
 RUN pip install statsmodels
 RUN pip install beautifulsoup4 html5lib
+
 #Pattern
 RUN pip install --allow-external pattern
+
 #NLTK
 RUN pip install pyyaml nltk
+
 #Networkx
 RUN pip install networkx
+
 #LLVM and Numba
 RUN cd /tmp && \
     wget http://llvm.org/releases/3.2/llvm-3.2.src.tar.gz && \
@@ -64,13 +78,15 @@ RUN cd /tmp && \
     pip install llvmpy && \
     pip install llvmmath && \
     pip install numba
+
 #Biopython
 RUN pip install biopython
+
 #Bokeh
 #RUN pip install requests bokeh
 
 #Install R 3+
-RUN echo 'deb http://cran.rstudio.com/bin/linux/ubuntu precise/' > /etc/apt/sources.list.d/r.list
+RUN echo 'deb http://cran.rstudio.com/bin/linux/ubuntu trusty/' > /etc/apt/sources.list.d/r.list
 RUN apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9
 RUN apt-get update
 RUN apt-get install -y r-base
@@ -80,10 +96,5 @@ RUN pip install rpy2
 #Vincent
 RUN pip install vincent
 
-ADD supervisord-ssh.conf /etc/supervisor/conf.d/
-ADD supervisord-ipython.conf /etc/supervisor/conf.d/
-
-EXPOSE 22 8888
-
-#Cleanup
-RUN rm -rf /tmp/*
+#Add runit services
+ADD sv /etc/service