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[ENH, WIP] Add multivariate connectivity methods #138

Merged
merged 67 commits into from
Jul 18, 2023
Merged

[ENH, WIP] Add multivariate connectivity methods #138

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446c7fe
add multivariate con base class
tsbinns Feb 22, 2023
73791c0
add multivariate imcoh classes
tsbinns Feb 22, 2023
fe0ab9b
bug fix incorrect import
tsbinns Feb 22, 2023
a25bda7
add text for mic mim examples
tsbinns Feb 23, 2023
953ecff
add correction for mic when seeds==targets
tsbinns Feb 23, 2023
63ed328
update example text
tsbinns Feb 23, 2023
5d3f318
add multivar methods
tsbinns Feb 25, 2023
e381b65
Revert "update example text"
tsbinns Feb 25, 2023
0d0c5f7
Revert "add correction for mic when seeds==targets"
tsbinns Feb 25, 2023
ab926ba
Revert "add text for mic mim examples"
tsbinns Feb 25, 2023
f1f7434
Revert "bug fix incorrect import"
tsbinns Feb 25, 2023
558291a
Revert "add multivariate imcoh classes"
tsbinns Feb 25, 2023
cd22d61
Revert "add multivariate con base class"
tsbinns Feb 25, 2023
9d24541
update indenting
tsbinns Feb 25, 2023
71297fc
remove gc code
tsbinns Feb 25, 2023
13604df
add patterns and rank attrs to base class
tsbinns Feb 26, 2023
3b1cb2c
add code to mic/mim example
tsbinns Feb 26, 2023
c7ff63f
bug fix multivar methods
tsbinns Feb 26, 2023
391aa09
update example and add references
tsbinns Feb 26, 2023
aa8d6a3
bug fix unsuitable indices and method storage
tsbinns Feb 28, 2023
fb675e2
Revert "bug fix unsuitable indices and method storage"
tsbinns Feb 28, 2023
60cbaf3
bug fix incorrect method format
tsbinns Feb 28, 2023
341eceb
bug fix incorrect indexing
tsbinns Feb 28, 2023
900d718
bug fix invalid channel type
tsbinns Mar 7, 2023
c14187d
bug fix incorrect ch names
tsbinns Mar 7, 2023
754aa70
fixed references
tsbinns Apr 15, 2023
70cc40d
fixed references
tsbinns Apr 15, 2023
53b139c
added gc support
tsbinns Apr 15, 2023
3c480c7
updated example
tsbinns Apr 15, 2023
0fe1e5a
added gc example
tsbinns Apr 15, 2023
f85e2d7
updated examples
tsbinns Apr 16, 2023
bec012f
renamed method
tsbinns Apr 16, 2023
ea21a3e
updated GC classes
tsbinns Apr 16, 2023
a349121
updated GC classes
tsbinns Apr 16, 2023
2385404
updated GC classes
tsbinns Apr 16, 2023
21c0a4c
updated example
tsbinns Apr 16, 2023
79ef7f0
updated gc and example
tsbinns Apr 17, 2023
3ee43e9
updated examples
tsbinns Apr 22, 2023
ba60ef3
bug fix indices
tsbinns Apr 22, 2023
c1f073c
reverted tests
tsbinns Apr 22, 2023
51da169
Merge branch 'mne-tools:main' into main
tsbinns Apr 22, 2023
bfb4bb3
Merge branch 'main' into mvc
tsbinns Apr 22, 2023
5f5a473
updated rank checks
tsbinns Apr 22, 2023
4c5ebbe
added gc indices check
tsbinns Apr 22, 2023
d02eaab
updated mic/mim error msg
tsbinns Apr 22, 2023
59a534d
added mvc tests
tsbinns Apr 22, 2023
ec85e9a
bug fix indexing
tsbinns Apr 23, 2023
100e235
updated docs
tsbinns Apr 23, 2023
72ae59b
I cannot spell
tsbinns Apr 23, 2023
1c4eb27
renamed multivar test
tsbinns Apr 26, 2023
301ad68
added multivar parallel test
tsbinns Apr 26, 2023
6a28e53
removed assert
tsbinns Apr 26, 2023
5a3183a
Merge branch 'main' into pr-2023_04_23
adam2392 May 2, 2023
aaaed17
removed explicit attrs
tsbinns May 21, 2023
658f9cf
updated examples
tsbinns May 21, 2023
f1dae8b
updated docs and bug fix failing tests
tsbinns May 21, 2023
96f77bc
quick fix pr errors
tsbinns May 21, 2023
9c5298c
Squashed commit of the following:
tsbinns Jun 30, 2023
043438a
removed whitespace
tsbinns Jun 30, 2023
72dea53
attempt manifest fix
tsbinns Jun 30, 2023
dae09a5
Merge branch 'main' into pr-2023_04_23
adam2392 Jul 14, 2023
894c42e
implemented pr feedback
tsbinns Jul 17, 2023
6f57c80
implemented pr feedback
tsbinns Jul 17, 2023
5608e82
Merge branch 'main' into pr-2023_04_23
tsbinns Jul 17, 2023
c7fea91
updated authorship and whats_new
tsbinns Jul 17, 2023
49dd83c
updated examples
tsbinns Jul 18, 2023
4c9548c
updated author email
tsbinns Jul 18, 2023
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2 changes: 2 additions & 0 deletions MANIFEST.in
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Expand Up @@ -40,4 +40,6 @@ exclude .github/PULL_REQUEST_TEMPLATE.md

exclude mne_connectivity/tests/data
recursive-exclude mne_connectivity/tests/data *
exclude mne_connectivity/spectral/tests/data
recursive-exclude mne_connectivity/spectral/tests/data *
recursive-exclude benchmarks *
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