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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 238 54

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 48 4

  3. MAxO MAxO Public

    Medical action ontology

    HTML 52 4

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 15 2

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Python 19 6

Repositories

Showing 10 of 240 repositories
  • phenotype2phenopacket Public

    Phenotype2Phenopacket is a command-line tool that converts a phenotype annotation into GA4GH Phenopackets, facilitating standardised phenotypic data representation.

    monarch-initiative/phenotype2phenopacket’s past year of commit activity
    Python 2 1 0 0 Updated Jan 8, 2025
  • phenopacket2prompt Public

    GA4GH Phenopacket to LLM prompt

    monarch-initiative/phenopacket2prompt’s past year of commit activity
    Java 3 MIT 2 3 0 Updated Jan 8, 2025
  • cookiecutter-monarch-ingest Public

    A Cruft cookiecutter for modular Koza ingests

    monarch-initiative/cookiecutter-monarch-ingest’s past year of commit activity
    Python 2 1 6 2 Updated Jan 8, 2025
  • phenopacket-store Public

    Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.

    monarch-initiative/phenopacket-store’s past year of commit activity
    Jupyter Notebook 18 BSD-3-Clause 4 14 0 Updated Jan 8, 2025
  • monarch-initiative/zfin-genotype-to-phenotype-ingest’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 8, 2025
  • monarch-initiative/mondo-curation-analysis’s past year of commit activity
    Jupyter Notebook 0 0 1 0 Updated Jan 8, 2025
  • mondo Public template

    Mondo Disease Ontology

    monarch-initiative/mondo’s past year of commit activity
    Jupyter Notebook 238 CC-BY-4.0 54 420 (2 issues need help) 34 Updated Jan 7, 2025
  • gpsea Public

    A Python library for discovery of genotype-phenotype associations

    monarch-initiative/gpsea’s past year of commit activity
    Python 5 MIT 1 18 0 Updated Jan 7, 2025
  • pheval Public

    A framework for empirical evaluation of phenotype matching and prioritisation

    monarch-initiative/pheval’s past year of commit activity
    Python 12 Apache-2.0 2 29 4 Updated Jan 7, 2025
  • maxo-annotations Public

    Annotations to terms of the Medical Action Ontology (MAxO)

    monarch-initiative/maxo-annotations’s past year of commit activity
    Python 2 CC-BY-4.0 0 70 0 Updated Jan 6, 2025

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