Add test for align tool get_version() class method

moshi4 · Jan 11, 2025 · ba5d867 · ba5d867
1 parent 674097d
commit ba5d867
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Showing 5 changed files with 35 additions and 0 deletions.
diff --git a/tests/align/tool/test_blast.py b/tests/align/tool/test_blast.py
@@ -5,6 +5,7 @@
 import pytest
 
 from pygenomeviz.align import Blast
+from pygenomeviz.const import UNKNOWN_VERSION
 from tests.marker import skipif_blast_not_installed
 
 
@@ -18,6 +19,12 @@ def test_blast_get_binary_names():
     assert Blast.get_binary_names() == ["makeblastdb", "blastn", "tblastx"]
 
 
+@skipif_blast_not_installed
+def test_blast_get_version():
+    """Test `get_version()`"""
+    assert Blast.get_version() != UNKNOWN_VERSION
+
+
 @skipif_blast_not_installed
 @pytest.mark.parametrize(
     ("seqtype"),

diff --git a/tests/align/tool/test_last.py b/tests/align/tool/test_last.py
@@ -3,6 +3,7 @@
 from pathlib import Path
 
 from pygenomeviz.align import Last
+from pygenomeviz.const import UNKNOWN_VERSION
 from tests.marker import skipif_last_not_installed
 
 
@@ -16,6 +17,12 @@ def test_last_get_binary_name():
     assert Last.get_binary_names() == ["lastdb", "lastal", "last-split", "maf-convert"]
 
 
+@skipif_last_not_installed
+def test_last_get_version():
+    """Test `get_version()`"""
+    assert Last.get_version() != UNKNOWN_VERSION
+
+
 @skipif_last_not_installed
 def test_last_api_genbank(
     gbk_dataset_files: list[Path],

diff --git a/tests/align/tool/test_mmseqs.py b/tests/align/tool/test_mmseqs.py
@@ -3,6 +3,7 @@
 from pathlib import Path
 
 from pygenomeviz.align import MMseqs
+from pygenomeviz.const import UNKNOWN_VERSION
 from tests.marker import skipif_mmseqs_not_installed
 
 
@@ -16,6 +17,12 @@ def test_mmseqs_get_binary_names():
     assert MMseqs.get_binary_names() == ["mmseqs"]
 
 
+@skipif_mmseqs_not_installed
+def test_mmseqs_get_version():
+    """Test `get_version()`"""
+    assert MMseqs.get_version() != UNKNOWN_VERSION
+
+
 @skipif_mmseqs_not_installed
 def test_mmseqs_api(gbk_dataset_files: list[Path], tmp_path: Path):
     """Run mmseqs easy-rbh"""

diff --git a/tests/align/tool/test_mummer.py b/tests/align/tool/test_mummer.py
@@ -5,6 +5,7 @@
 import pytest
 
 from pygenomeviz.align import MUMmer
+from pygenomeviz.const import UNKNOWN_VERSION
 from tests.marker import skipif_mummer_not_installed
 
 
@@ -23,6 +24,12 @@ def test_mummer_get_binary_names():
     ]
 
 
+@skipif_mummer_not_installed
+def test_mummer_get_version():
+    """Test `get_version()`"""
+    assert MUMmer.get_version() != UNKNOWN_VERSION
+
+
 @skipif_mummer_not_installed
 @pytest.mark.parametrize(
     ("seqtype"),

diff --git a/tests/align/tool/test_pmauve.py b/tests/align/tool/test_pmauve.py
@@ -3,6 +3,7 @@
 from pathlib import Path
 
 from pygenomeviz.align import ProgressiveMauve
+from pygenomeviz.const import UNKNOWN_VERSION
 from tests.marker import skipif_pmauve_not_installed
 
 
@@ -16,6 +17,12 @@ def test_pmauve_get_binary_names():
     assert ProgressiveMauve.get_binary_names() == ["progressiveMauve"]
 
 
+@skipif_pmauve_not_installed
+def test_pmauve_get_version():
+    """Test `get_version()`"""
+    assert ProgressiveMauve.get_version() == UNKNOWN_VERSION
+
+
 @skipif_pmauve_not_installed
 def test_pmauve_api_genbank(gbk_dataset_files: list[Path], tmp_path: Path):
     """Run progressiveMauve with genbank files"""