v1.11.0

Fixed

• Correct suffix of consensus file when medaka_consensus outputs a fastq.

Added

• Choice of model file can be introspected from input files. For BAM files the
  read group (RG) headers are searched according to the dorado
  specification,
  whilst for .fastq files the comment section of a number of reads are checked
  for corresponding read group information. In the latter case see README for
  information on correctly converting basecaller output to .fastq whilst
  maintaining the relevant meta information.
• medaka tools resolve_model can display the model that would automatically
  be used for a given input file.

Changed

• If no model is provided on command-line interface (medaka consensus,
  medaka_consensus, and medaka_haploid_variant) automatic attempts will be made
  to choose the appropriate model.