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pongorlorinc edited this page Mar 15, 2019 · 13 revisions

Welcome to the BAMscale wiki!

Manual For Use

  1. Brief Usage
  2. Installation
  3. Benchmarks
  4. Quantifying Peaks with "cov"
  5. Scaling Samples with "scale" from DNA-seq Data

Detailed Tutorials

  1. OK-seq and RFD Track Generation
  2. Quantifying ATAC-seq Peaks
  3. Generating Scaled Coverage Tracks
  4. END-seq data
  5. Log2 Coverage Tracks for Replication Timing Data
  6. Smoothening Function for Coverage Tracks
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